RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 WDR54Q9H977 334 aa1.16□□□□□ -2.22
SMC4-223ENST00000493695 SNX12Q9UMY4 172 aa1.16□□□□□ -2.22
SMC4-223ENST00000493695 KLK5Q9Y337 293 aaPredicted RBP1.16□□□□□ -2.22
SMC4-223ENST00000493695 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.16□□□□□ -2.22
SMC4-223ENST00000493695 AMMECR1Q9Y4X0 333 aaPredicted RBP1.16□□□□□ -2.22
SMC4-223ENST00000493695 COL4A1P02462 1669 aa1.16□□□□□ -2.22
SMC4-223ENST00000493695 MPDZO75970 2070 aa1.16□□□□□ -2.22
SMC4-223ENST00000493695 RTEL1-TNFRSF6BF6WH68 1400 aa1.15□□□□□ -2.22
SMC4-223ENST00000493695 IGLV3-9A0A075B6K5 115 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 TRPC5OSA6NMA1 111 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 COPEO14579 308 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 ATP5G1P05496 136 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 OR10J1P30954 320 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 CRATP43155 626 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 TAS2R45P59539 299 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 HERVK_113P63121 156 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 PRDX4Q13162 271 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 ANGPT1Q15389 498 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 Q6ZRN7 208 aaPredicted RBP1.15□□□□□ -2.23
SMC4-223ENST00000493695 CCDC121Q6ZUS5 278 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 C2orf91Q6ZV80 131 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 RIBC1Q8N443 379 aaPredicted RBP1.15□□□□□ -2.23
SMC4-223ENST00000493695 CCDC112Q8NEF3 446 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 ATP6V1C2Q8NEY4 427 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 OR7G1Q8NGA0 311 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 OR2D3Q8NGH3 330 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 TLCD1Q96CP7 247 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 RBP7Q96R05 134 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 TMEM208Q9BTX3 173 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 EIF5A2Q9GZV4 153 aaKnown RBP1.15□□□□□ -2.23
SMC4-223ENST00000493695 METTL9Q9H1A3 318 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 SPACA1Q9HBV2 294 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 CD300AQ9UGN4 299 aa1.15□□□□□ -2.23
SMC4-223ENST00000493695 PXDNLA1KZ92 1463 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 ERICH2A1L162 156 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 PSMG1O95456 288 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 ZNF728P0DKX0 622 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 F8A1P23610 371 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 CD24P25063 80 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 XCL1P47992 114 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 MGAT3Q09327 533 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 LGALS9BQ3B8N2 356 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 CLDND2Q8NHS1 167 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 SPACA4Q8TDM5 124 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 CPNE2Q96FN4 548 aaPredicted RBP1.14□□□□□ -2.23
SMC4-223ENST00000493695 SLC22A4Q9H015 551 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 PARVAQ9NVD7 372 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 NDUFB11Q9NX14 153 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 GMEB1Q9Y692 573 aa1.14□□□□□ -2.23
SMC4-223ENST00000493695 MDC1Q14676 2089 aaKnown RBP1.14□□□□□ -2.23
SMC4-223ENST00000493695 NYNRINQ9P2P1 1898 aaKnown RBP1.14□□□□□ -2.23
SMC4-223ENST00000493695 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 DAPL1A0PJW8 107 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 ZNF860A6NHJ4 632 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 METTL15A6NJ78 407 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 C11orf86A6NJI1 115 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 OR11H12B2RN74 326 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 CCRL2O00421 344 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 MRASO14807 208 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 NDUFB2O95178 105 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 LINC00614P0C842 121 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 GRPRP30550 384 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 CA7P43166 264 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 HLA-DRB5Q30154 266 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 N4BP2L1Q5TBK1 243 aaPredicted RBP1.13□□□□□ -2.23
SMC4-223ENST00000493695 AGTRAPQ6RW13 159 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 Q6ZTI0 123 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 GLT6D1Q7Z4J2 308 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 CNEP1R1Q8N9A8 125 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 OR11H2Q8NH07 326 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 OR4X1Q8NH49 305 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 OR10D3Q8NH80 312 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 ZNF625Q96I27 306 aaPredicted RBP1.13□□□□□ -2.23
SMC4-223ENST00000493695 OR52B2Q96RD2 323 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 BBS2Q9BXC9 721 aa1.13□□□□□ -2.23
SMC4-223ENST00000493695 CHMP4BQ9H444 224 aaKnown RBP1.13□□□□□ -2.23
SMC4-223ENST00000493695 A0A1W2PP64 1363 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 DSCAMO60469 2012 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 IGHV1-69P01742 117 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 HIST1H1CP16403 213 aaKnown RBP1.12□□□□□ -2.23
SMC4-223ENST00000493695 CD79BP40259 229 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 SERPINB10P48595 397 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 CLDN12P56749 244 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 RBM11P57052 281 aaKnown RBP1.12□□□□□ -2.23
SMC4-223ENST00000493695 FABP5Q01469 135 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 SMAGPQ0VAQ4 97 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 SDHAF4Q5VUM1 108 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 DNM1P34Q6PK57 102 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 AMTNQ6UX39 209 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 DRAM2Q6UX65 266 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 ATP5L2Q7Z4Y8 100 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 FAM19A5Q7Z5A7 132 aaPredicted RBP1.12□□□□□ -2.23
SMC4-223ENST00000493695 CD302Q8IX05 232 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 SMCR5Q8TEV8 140 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 MS4A6EQ96DS6 147 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 ATP6V1G3Q96LB4 118 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 MROQ9BYG7 248 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 EMC3Q9P0I2 261 aa1.12□□□□□ -2.23
SMC4-223ENST00000493695 PUS1Q9Y606 427 aaKnown RBP eCLIP1.12□□□□□ -2.23
SMC4-223ENST00000493695 NCKAP5O14513 1909 aa1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms