RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 RPL39P5Q59GN2 51 aa17.71■□□□□ 0.43
SMC4-221ENST00000489573 DOCK11Q5JSL3 2073 aa17.71■□□□□ 0.43
SMC4-221ENST00000489573 MAST4O15021 2626 aa17.71■□□□□ 0.42
SMC4-221ENST00000489573 SAA2-SAA4A0A096LPE2 208 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 IGHV4-61A0A0C4DH41 118 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 M0R1X1 148 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 PROP1O75360 226 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 CDS2O95674 445 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 IFNA21P01568 189 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 SERPINE2P07093 398 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 SAA2P0DJI9 122 aaPredicted RBP17.7■□□□□ 0.42
SMC4-221ENST00000489573 RPL30P62888 115 aaKnown RBP17.7■□□□□ 0.42
SMC4-221ENST00000489573 SRSF4Q08170 494 aaKnown RBP17.7■□□□□ 0.42
SMC4-221ENST00000489573 TMEM268Q5VZI3 342 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 ZNF695Q8IW36 515 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 ODF3L1Q8IXM7 274 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 ABHD12Q8N2K0 398 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 LINC00311Q8N616 119 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 OR2T35Q8NGX2 323 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 OR9G1Q8NH87 305 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 ZNF596Q8TC21 504 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 TCTEX1D2Q8WW35 142 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 IL22RA2Q969J5 263 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 WDR89Q96FK6 387 aaPredicted RBP17.7■□□□□ 0.42
SMC4-221ENST00000489573 C13orf42A0A1B0GVH6 325 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 J3QR06 171 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 FOXH1O75593 365 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 C1QBP02746 253 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 EIF2B2P49770 351 aaKnown RBP17.7■□□□□ 0.42
SMC4-221ENST00000489573 LCN2P80188 198 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 CLEC12BQ2HXU8 276 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 GGNBP1Q5YKI7 109 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 SELENOHQ8IZQ5 122 aaKnown RBP17.7■□□□□ 0.42
SMC4-221ENST00000489573 KIR3DL3Q8N743 410 aa17.7■□□□□ 0.42
SMC4-221ENST00000489573 PIGBOS1A0A0B4J2F0 54 aa17.69■□□□□ 0.42
SMC4-221ENST00000489573 DUTP33316 252 aaKnown RBP17.69■□□□□ 0.42
SMC4-221ENST00000489573 ARF6P62330 175 aa17.69■□□□□ 0.42
SMC4-221ENST00000489573 DEFB113Q30KQ7 82 aa17.69■□□□□ 0.42
SMC4-221ENST00000489573 LYZL2Q7Z4W2 148 aa17.69■□□□□ 0.42
SMC4-221ENST00000489573 TCTEX1D1Q8N7M0 179 aa17.69■□□□□ 0.42
SMC4-221ENST00000489573 SLC35G3Q8N808 338 aa17.69■□□□□ 0.42
SMC4-221ENST00000489573 RBPMSQ93062 196 aaKnown RBP17.69■□□□□ 0.42
SMC4-221ENST00000489573 ZNF251Q9BRH9 671 aa17.69■□□□□ 0.42
SMC4-221ENST00000489573 ZNRD1Q9P1U0 126 aa17.69■□□□□ 0.42
SMC4-221ENST00000489573 IGHV2-26A0A0B4J1V2 119 aa17.68■□□□□ 0.42
SMC4-221ENST00000489573 IGHV2-70DA0A0C4DH43 119 aa17.68■□□□□ 0.42
SMC4-221ENST00000489573 DUXBA0A1W2PPF3 345 aa17.68■□□□□ 0.42
SMC4-221ENST00000489573 LINC00473A8K010 186 aa17.68■□□□□ 0.42
SMC4-221ENST00000489573 SLC25A16P16260 332 aa17.68■□□□□ 0.42
SMC4-221ENST00000489573 LRRC75A-AS1Q8N1F1 130 aa17.68■□□□□ 0.42
SMC4-221ENST00000489573 Q8N7P7 452 aa17.68■□□□□ 0.42
SMC4-221ENST00000489573 TNFRSF14Q92956 283 aa17.68■□□□□ 0.42
SMC4-221ENST00000489573 SEC22AQ96IW7 307 aa17.68■□□□□ 0.42
SMC4-221ENST00000489573 S1PR3Q99500 378 aa17.68■□□□□ 0.42
SMC4-221ENST00000489573 FAM212BQ9NTI7 297 aaPredicted RBP17.68■□□□□ 0.42
SMC4-221ENST00000489573 TMED3Q9Y3Q3 217 aa17.68■□□□□ 0.42
SMC4-221ENST00000489573 MPTX1A8MV57 137 aa17.67■□□□□ 0.42
SMC4-221ENST00000489573 TOR1AO14656 332 aa17.67■□□□□ 0.42
SMC4-221ENST00000489573 PAX2Q02962 417 aa17.67■□□□□ 0.42
SMC4-221ENST00000489573 ZNF585BQ52M93 769 aa17.67■□□□□ 0.42
SMC4-221ENST00000489573 C1orf229Q6ZS94 237 aaPredicted RBP17.67■□□□□ 0.42
SMC4-221ENST00000489573 NOXA1Q86UR1 476 aa17.67■□□□□ 0.42
SMC4-221ENST00000489573 OR10X1Q8NGY0 326 aa17.67■□□□□ 0.42
SMC4-221ENST00000489573 OR10C1Q96KK4 312 aa17.67■□□□□ 0.42
SMC4-221ENST00000489573 CLEC7AQ9BXN2 247 aa17.67■□□□□ 0.42
SMC4-221ENST00000489573 RPA2P15927 270 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 CYCSP99999 105 aaKnown RBP17.66■□□□□ 0.42
SMC4-221ENST00000489573 OR2B11Q5JQS5 317 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 C1orf122Q6ZSJ8 110 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 SPAG16Q8N0X2 631 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 DRAXINQ8NBI3 349 aaPredicted RBP17.66■□□□□ 0.42
SMC4-221ENST00000489573 C2orf50Q96LR7 162 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 NMES1Q9C002 83 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 RANBP3Q9H6Z4 567 aaPredicted RBP17.66■□□□□ 0.42
SMC4-221ENST00000489573 POLR3KQ9Y2Y1 108 aaPredicted RBP17.66■□□□□ 0.42
SMC4-221ENST00000489573 KPTNQ9Y664 436 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 FAM157AC9JC47 383 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 G3V3Q6 166 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 LPAR6P43657 344 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 THBS3P49746 956 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 GZMKP49863 264 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 PRRX1P54821 245 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 DLX1P56177 255 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 LINC00205P59089 165 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 NCR3LG1Q68D85 454 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 ZNF833PQ6ZTB9 187 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 OR13D1Q8NGV5 346 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 ADTRPQ96IZ2 230 aa17.66■□□□□ 0.42
SMC4-221ENST00000489573 ARID1AO14497 2285 aa17.65■□□□□ 0.42
SMC4-221ENST00000489573 IGKV1-39P01597 117 aa17.65■□□□□ 0.42
SMC4-221ENST00000489573 IGKV1D-39P04432 117 aa17.65■□□□□ 0.42
SMC4-221ENST00000489573 VDAC1P21796 283 aa17.65■□□□□ 0.42
SMC4-221ENST00000489573 PRTN3P24158 256 aa17.65■□□□□ 0.42
SMC4-221ENST00000489573 COX7A1P24310 79 aa17.65■□□□□ 0.42
SMC4-221ENST00000489573 IL3RAP26951 378 aa17.65■□□□□ 0.42
SMC4-221ENST00000489573 NKX2-5P52952 324 aaPredicted RBP17.65■□□□□ 0.42
SMC4-221ENST00000489573 IAH1Q2TAA2 248 aaPredicted RBP17.65■□□□□ 0.42
SMC4-221ENST00000489573 Q5BKY6 102 aa17.65■□□□□ 0.42
SMC4-221ENST00000489573 FAM71F2Q6NXP2 309 aa17.65■□□□□ 0.42
SMC4-221ENST00000489573 CD300LFQ8TDQ1 290 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms