RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 OR13C7P0DN81 318 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 AGAP20933 346 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 PRDX2P32119 198 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 CCL8P80075 99 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 MSI2Q96DH6 328 aaKnown RBP10.14□□□□□ -0.79
HDAC6-230ENST00000488543 ASH1LQ9NR48 2969 aaKnown RBP10.14□□□□□ -0.79
HDAC6-230ENST00000488543 COA4Q9NYJ1 87 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 IL19Q9UHD0 177 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 RNF115Q9Y4L5 304 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 RAI1Q7Z5J4 1906 aaPredicted RBP10.14□□□□□ -0.79
HDAC6-230ENST00000488543 IGHV3OR15-7A0A075B7D8 119 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 DVL1P1P54792 670 aaPredicted RBP10.13□□□□□ -0.79
HDAC6-230ENST00000488543 RND3P61587 244 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 AESQ08117 197 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 GUK1Q16774 197 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 LIAT1Q6ZQX7 453 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 DMBX1Q8NFW5 382 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 UBALD1Q8TB05 177 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 NINJ1Q92982 152 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 C18orf12Q96KH6 178 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 RARRES2Q99969 163 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 SCRT1Q9BWW7 348 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 GCM1Q9NP62 436 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 KCNIP3Q9Y2W7 256 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 DYSFO75923 2080 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 ARFGEF3Q5TH69 2177 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 A0A1W2PPR1 153 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 NUDT19A8MXV4 375 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 TNFSF12O43508 249 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 EIF3GO75821 320 aaKnown RBP eCLIP10.13□□□□□ -0.79
HDAC6-230ENST00000488543 ADH4P08319 380 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 SNCAP37840 140 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 CEBPGP53567 150 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 POLR2GP62487 172 aaKnown RBP eCLIP10.13□□□□□ -0.79
HDAC6-230ENST00000488543 SRSF1Q07955 248 aaKnown RBP eCLIP10.13□□□□□ -0.79
HDAC6-230ENST00000488543 KRBOX4Q5JUW0 171 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 EIF5AL1Q6IS14 154 aaKnown RBP10.13□□□□□ -0.79
HDAC6-230ENST00000488543 ZNF818PQ6ZRF7 136 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 OR10J5Q8NHC4 309 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 FAM213BQ8TBF2 198 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 DSCAMO60469 2012 aa10.13□□□□□ -0.79
HDAC6-230ENST00000488543 E5RGE8 158 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 CD55P08174 381 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 EIF5AP63241 154 aaKnown RBP10.12□□□□□ -0.79
HDAC6-230ENST00000488543 CCL20P78556 96 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 PAX5Q02548 391 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 TESK1Q15569 626 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 MAJINQ3KP22 176 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 FAM201AQ5SY85 155 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 SLC16A13Q7RTY0 426 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 CCDC71LQ8N9Z2 235 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 UBAC2Q8NBM4 344 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 Q8TCH9 128 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 FAM222BQ8WU58 562 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 SFT2D1Q8WV19 159 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 HIST1H2BAQ96A08 127 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 BIN3Q9NQY0 253 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 CCL28Q9NRJ3 127 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 C19orf12Q9NSK7 152 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 NSG2Q9Y328 171 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 OR2W1Q9Y3N9 320 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 A0A1W2PPE2 198 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 IGSF23A1L1A6 192 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 C7orf77A4D0Y5 90 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 MPPED1O15442 326 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 GAPDHP04406 335 aaKnown RBP10.12□□□□□ -0.79
HDAC6-230ENST00000488543 APOBEC3AP31941 199 aaPredicted RBP10.12□□□□□ -0.79
HDAC6-230ENST00000488543 GLIPR1P48060 266 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 HOXA1P49639 335 aaPredicted RBP10.12□□□□□ -0.79
HDAC6-230ENST00000488543 LRTM2Q8N967 370 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 OR1L1Q8NH94 360 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 CD300LFQ8TDQ1 290 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 IL1F10Q8WWZ1 152 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 SUCNR1Q9BXA5 334 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 RNF7Q9UBF6 113 aa10.12□□□□□ -0.79
HDAC6-230ENST00000488543 C17orf100A8MU93 164 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 B9A039 149 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 C12orf77C9JDV5 145 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 SSSCA1O60232 199 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 HEXAP06865 529 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 TNFSF4P23510 183 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 IZUMO4Q1ZYL8 232 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 CXorf66Q5JRM2 361 aaPredicted RBP10.11□□□□□ -0.79
HDAC6-230ENST00000488543 FAM185AQ8N0U4 392 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 PRR18Q8N4B5 295 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 ZNF565Q8N9K5 539 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 FAM212BQ9NTI7 297 aaPredicted RBP10.11□□□□□ -0.79
HDAC6-230ENST00000488543 HSD17B6O14756 317 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 GPR137BO60478 399 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 CST7O76096 145 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 CYB5R3P00387 301 aaPredicted RBP10.11□□□□□ -0.79
HDAC6-230ENST00000488543 FBP1P09467 338 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 DANCRP0C864 163 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 RUNX1Q01196 453 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 ODF1Q14990 250 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 ZNF672Q499Z4 452 aaPredicted RBP10.11□□□□□ -0.79
HDAC6-230ENST00000488543 TBC1D26Q86UD7 250 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 TMEM217Q8N7C4 229 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 TPRX1Q8N7U7 411 aa10.11□□□□□ -0.79
HDAC6-230ENST00000488543 TMEM204Q9BSN7 226 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms