RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 RNASE6Q93091 150 aaKnown RBP0.54□□□□□ -2.32
VPS50-216ENST00000484954 OR7D2Q96RA2 312 aa0.54□□□□□ -2.32
VPS50-216ENST00000484954 MGLLQ99685 303 aa0.54□□□□□ -2.32
VPS50-216ENST00000484954 NKX6-2Q9C056 277 aaPredicted RBP0.54□□□□□ -2.32
VPS50-216ENST00000484954 HHLA2Q9UM44 414 aa0.54□□□□□ -2.32
VPS50-216ENST00000484954 TP53TG1Q9Y2A0 90 aa0.54□□□□□ -2.32
VPS50-216ENST00000484954 PUS1Q9Y606 427 aaKnown RBP eCLIP0.54□□□□□ -2.32
VPS50-216ENST00000484954 ALG5Q9Y673 324 aa0.54□□□□□ -2.32
VPS50-216ENST00000484954 NPATQ14207 1427 aa0.54□□□□□ -2.32
VPS50-216ENST00000484954 IGLV3-9A0A075B6K5 115 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 LINC00862A6NCI5 91 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 FABP12A6NFH5 140 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 SLC17A3O00476 420 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 MRASO14807 208 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 LIN7AO14910 233 aaPredicted RBP0.53□□□□□ -2.32
VPS50-216ENST00000484954 AZIN1O14977 448 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 IGHV1-69P01742 117 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 ORM1P02763 201 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 CRYBA1P05813 215 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 PVALBP20472 110 aaPredicted RBP0.53□□□□□ -2.32
VPS50-216ENST00000484954 CD24P25063 80 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 OR10J1P30954 320 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 EXOC3L4Q17RC7 722 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 CLEC12BQ2HXU8 276 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 ZNF791Q3KP31 576 aaPredicted RBP0.53□□□□□ -2.32
VPS50-216ENST00000484954 ATP5L2Q7Z4Y8 100 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 SPATA12Q7Z6I5 190 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 SLC13A5Q86YT5 568 aaPredicted RBP0.53□□□□□ -2.32
VPS50-216ENST00000484954 SYCE1Q8N0S2 351 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 OR10D3Q8NH80 312 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 OR5AK3PQ8NH89 298 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 CCDC12Q8WUD4 166 aaPredicted RBP0.53□□□□□ -2.32
VPS50-216ENST00000484954 PPWD1Q96BP3 646 aaKnown RBP0.53□□□□□ -2.32
VPS50-216ENST00000484954 SMIM12Q96EX1 92 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 MED18Q9BUE0 208 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 WDR54Q9H977 334 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 SPACA1Q9HBV2 294 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 SLC2A9Q9NRM0 540 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 NDUFB11Q9NX14 153 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 EURLQ9NYK6 297 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 GLS2Q9UI32 602 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 SNX10Q9Y5X0 201 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 RTEL1-TNFRSF6BF6WH68 1400 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 RGS12O14924 1447 aa0.53□□□□□ -2.32
VPS50-216ENST00000484954 NCKAP5O14513 1909 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 TMED7-TICAM2A0A0A6YYA0 188 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 A0A1W2PQD3 144 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 TMEM235A6NFC5 223 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 TRPC5OSA6NMA1 111 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 OR11H12B2RN74 326 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 M0QX08 132 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 NEMFO60524 1076 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 NAPSAO96009 420 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 HBZP02008 142 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 PRB4P10163 310 aaPredicted RBP0.52□□□□□ -2.33
VPS50-216ENST00000484954 CXCL2P19875 107 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 CXCL3P19876 107 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 MIPP30301 263 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 CA7P43166 264 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 XCL1P47992 114 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 RPL14P50914 215 aaKnown RBP0.52□□□□□ -2.33
VPS50-216ENST00000484954 RBM11P57052 281 aaKnown RBP0.52□□□□□ -2.33
VPS50-216ENST00000484954 H2BFSP57053 126 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 HPCAP84074 193 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 SMAGPQ0VAQ4 97 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 HLA-DRB5Q30154 266 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 AGTRAPQ6RW13 159 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 AMTNQ6UX39 209 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 DRAM2Q6UX65 266 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 Q6ZTI0 123 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 GLT6D1Q7Z4J2 308 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 SLC35F6Q8N357 371 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 ZNF283Q8N7M2 679 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 DAND5Q8N907 189 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 CNEP1R1Q8N9A8 125 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 OR4X2Q8NGF9 303 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 OR11H2Q8NH07 326 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 CLDND2Q8NHS1 167 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 SMCR5Q8TEV8 140 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 DNAJB3Q8WWF6 145 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 SLC35G5Q96KT7 338 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 RBP7Q96R05 134 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 TMEM208Q9BTX3 173 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 TIMM21Q9BVV7 248 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 MROQ9BYG7 248 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 MS4A6AQ9H2W1 248 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 PARVAQ9NVD7 372 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 DNAJC12Q9UKB3 198 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 SNX12Q9UMY4 172 aa0.52□□□□□ -2.33
VPS50-216ENST00000484954 KLK5Q9Y337 293 aaPredicted RBP0.52□□□□□ -2.33
VPS50-216ENST00000484954 SBDSQ9Y3A5 250 aaKnown RBP eCLIP0.52□□□□□ -2.33
VPS50-216ENST00000484954 TMSB15BA0A087X1C1 80 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 A0A1B0GVG6 124 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 TINCRA0A1B0GVN0 87 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 GRIFINA4D1Z8 144 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 ARRDC5A6NEK1 342 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 A8MUN3 132 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 FTCDNL1E5RQL4 147 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 M0R381 172 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 CCRL2O00421 344 aa0.51□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms