RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, human

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-215	ENST00000484203	ZNF367	Q7RTV3	350 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	LRRTM1	Q86UE6	522 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZNF695	Q8IW36	515 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	LYG1	Q8N1E2	194 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	FAM89B	Q8N5H3	189 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	TCTEX1D1	Q8N7M0	179 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	RNF152	Q8N8N0	203 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZNF439	Q8NDP4	499 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	OR8U1	Q8NH10	309 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	OR1L1	Q8NH94	360 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	CT45A3	Q8NHU0	189 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	MRPL30	Q8TCC3	161 aa	Known RBP	4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	FCGR1B	Q92637	280 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	RAB24	Q969Q5	203 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	ORAI1	Q96D31	301 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	MGLL	Q99685	303 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	YTHDF1	Q9BYJ9	559 aa	Known RBP	4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	CCDC90B	Q9GZT6	254 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	SLC23A1	Q9UHI7	598 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	RAB22A	Q9UL26	194 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	RNF150	Q9ULK6	438 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	RAB26	Q9ULW5	256 aa		4.86	□□□□□ -1.63
PTCD3-215	ENST00000484203	IGHV3-43	A0A0B4J1X8	118 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	TRAV1-2	A0A0B4J238	106 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203		A0A1W2PPE3	182 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	METTL21EP	A6NDL7	271 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	ARPC1B	O15143	372 aa	Known RBP	4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	HSPA12A	O43301	675 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	SCGN	O76038	276 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	IGHG4	P01861	327 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	HLA-DRB1	P01911	266 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	IGHV3-43D	P0DP04	118 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	GADD45A	P24522	165 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	MYL9	P24844	172 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	CALR	P27797	417 aa	Known RBP	4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	THBS3	P49746	956 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZNF134	P52741	427 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	ACTB	P60709	375 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	TMEM267	Q0VDI3	215 aa	Predicted RBP	4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	CBX3	Q13185	183 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	DIAPH2-AS1	Q14236	149 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	KIR2DS1	Q14954	304 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	TCTEX1D4	Q5JR98	221 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	PYHIN1	Q6K0P9	492 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	LIN54	Q6MZP7	749 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZNF880	Q6PDB4	577 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	IZUMO2	Q6UXV1	221 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	FAM71E2	Q8N5Q1	922 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203		Q8N9W7	124 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	NPB	Q8NG41	125 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	OR10V1	Q8NGI7	309 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	MRAP	Q8TCY5	172 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	IL1F10	Q8WWZ1	152 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	TMEM203	Q969S6	136 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	PTX4	Q96A99	478 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	FAM3D	Q96BQ1	224 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	SULT4A1	Q9BR01	284 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	FAAP24	Q9BTP7	215 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	PLSCR3	Q9NRY6	295 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZNF581	Q9P0T4	197 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	NKX1-2	Q9UD57	310 aa	Predicted RBP	4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZNF107	Q9UII5	783 aa	Predicted RBP	4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZNF221	Q9UK13	617 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203		V9GY05	133 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	CMYA5	Q8N3K9	4069 aa		4.85	□□□□□ -1.63
PTCD3-215	ENST00000484203	PRKDC	P78527	4128 aa	Known RBP	4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	TENM3	Q9P273	2699 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	IGHV3-72	A0A0B4J1Y9	119 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	TRDC	B7Z8K6	153 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	NBR2	O15453	112 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	DENR	O43583	198 aa	Known RBP	4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	RAMP3	O60896	148 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	IGLL1	P15814	213 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	PPP1CC	P36873	323 aa	Known RBP	4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	VHL	P40337	213 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	INSL3	P51460	131 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	PTTG1IP	P53801	180 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	GABARAPL2	P60520	117 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	QRFP	P83859	136 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	NHLH2	Q02577	135 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	UNC119	Q13432	240 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	SSX1	Q16384	188 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	SRSF7	Q16629	238 aa	Known RBP eCLIP	4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	C5orf64	Q2M2E5	130 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	UTF1	Q5T230	341 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	FAM27D1	Q5T7N8	215 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZNF660	Q6AZW8	331 aa	Predicted RBP	4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZNF833P	Q6ZTB9	187 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	C6orf201	Q7Z4U5	140 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZNF329	Q86UD4	541 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	KLHL30-AS1	Q8NEE0	82 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	OR52L2P	Q8NGH6	319 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	OR5M8	Q8NGP6	311 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	C4orf3	Q8WVX3	66 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	RAB3C	Q96E17	227 aa		4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	NOL4L	Q96MY1	436 aa	Predicted RBP	4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	TSNAX	Q99598	290 aa	Known RBP	4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	CMSS1	Q9BQ75	279 aa	Known RBP	4.84	□□□□□ -1.63
PTCD3-215	ENST00000484203	LPAR5	Q9H1C0	372 aa		4.84	□□□□□ -1.63

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