RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 MARCH1Q8TCQ1 289 aa9.9□□□□□ -0.82
SDC1-206ENST00000482879 ZNF251Q9BRH9 671 aa9.9□□□□□ -0.82
SDC1-206ENST00000482879 SDHAF2Q9NX18 166 aa9.9□□□□□ -0.82
SDC1-206ENST00000482879 TEP1Q99973 2627 aaKnown RBP9.9□□□□□ -0.82
SDC1-206ENST00000482879 FN1P02751 2386 aaKnown RBP9.89□□□□□ -0.83
SDC1-206ENST00000482879 OOSP1A8MZH6 123 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 M0R1X1 148 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 PROP1O75360 226 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 IGLV2-14P01704 120 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 FBP1P09467 338 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 SRD5A1P18405 259 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 GNRHRP30968 328 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 ECI1P42126 302 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 CCR6P51684 374 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 ZNF816Q0VGE8 651 aaPredicted RBP9.89□□□□□ -0.83
SDC1-206ENST00000482879 BAMBIQ13145 260 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 DCTN2Q13561 401 aaKnown RBP9.89□□□□□ -0.83
SDC1-206ENST00000482879 PLA1AQ53H76 456 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 CCDC144NLQ6NUI1 221 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 FAM71F2Q6NXP2 309 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 ZNF818PQ6ZRF7 136 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 TGIF2LXQ8IUE1 241 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 SLC38A6Q8IZM9 456 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 POC5Q8NA72 575 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 ZBTB34Q8NCN2 500 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 ZFAND1Q8TCF1 268 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 RTN4IP1Q8WWV3 396 aaPredicted RBP9.89□□□□□ -0.83
SDC1-206ENST00000482879 MRGPRFQ96AM1 343 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 C5orf30Q96GV9 206 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 AKR1E2Q96JD6 320 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 SCGB3A2Q96PL1 93 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 RSRP1Q9BUV0 290 aa9.89□□□□□ -0.83
SDC1-206ENST00000482879 NSD1Q96L73 2696 aaPredicted RBP9.89□□□□□ -0.83
SDC1-206ENST00000482879 IGHV1-3A0A0C4DH29 117 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 GPR31O00270 319 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 TXNL1O43396 289 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 BTCP35070 178 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 SCGB2A2Q13296 93 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 SURF2Q15527 256 aaPredicted RBP9.88□□□□□ -0.83
SDC1-206ENST00000482879 MSMO1Q15800 293 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 DEFB112Q30KQ8 113 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 ABCA11PQ4W5N1 156 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 PHLDA2Q53GA4 152 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 MOB3BQ86TA1 216 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 OR8H3Q8N146 312 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 DRAXINQ8NBI3 349 aaPredicted RBP9.88□□□□□ -0.83
SDC1-206ENST00000482879 BVESQ8NE79 360 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 ZDHHC16Q969W1 377 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 SLC25A21Q9BQT8 299 aaPredicted RBP9.88□□□□□ -0.83
SDC1-206ENST00000482879 MRPL20Q9BYC9 149 aaKnown RBP9.88□□□□□ -0.83
SDC1-206ENST00000482879 MEGF9Q9H1U4 602 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 PALMDQ9NP74 551 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 GPR132Q9UNW8 380 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 SVEP1Q4LDE5 3571 aa9.88□□□□□ -0.83
SDC1-206ENST00000482879 MDFIC2A0A1B0GVS7 189 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 FAM240BA0A1B0GVZ2 78 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 TNFSF12O43508 249 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 NDUFB6O95139 128 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 CTSDP07339 412 aaPredicted RBP9.87□□□□□ -0.83
SDC1-206ENST00000482879 CT45A6P0DMU7 189 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 CT45A5P0DMU8 189 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 CT45A7P0DMV0 189 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 PI3P19957 117 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 S100GP29377 79 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 ARHGDIBP52566 201 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 LINC00205P59089 165 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 RBMS2Q15434 407 aaKnown RBP9.87□□□□□ -0.83
SDC1-206ENST00000482879 GLDNQ6ZMI3 551 aaPredicted RBP9.87□□□□□ -0.83
SDC1-206ENST00000482879 CMTM1Q8IZ96 169 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 ZNF486Q96H40 463 aaPredicted RBP9.87□□□□□ -0.83
SDC1-206ENST00000482879 GPHA2Q96T91 129 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 NABP2Q9BQ15 211 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 DPAGT1Q9H3H5 408 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 C14orf166Q9Y224 244 aaKnown RBP9.87□□□□□ -0.83
SDC1-206ENST00000482879 VSIG4Q9Y279 399 aa9.87□□□□□ -0.83
SDC1-206ENST00000482879 ANK3Q12955 4377 aaKnown RBP9.86□□□□□ -0.83
SDC1-206ENST00000482879 MXRA5Q9NR99 2828 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 IGHV3-72A0A0B4J1Y9 119 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 A0A1W2PPI3 338 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 TIMM23O14925 209 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 CRLF1O75462 422 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 PGLYRP1O75594 196 aaPredicted RBP9.86□□□□□ -0.83
SDC1-206ENST00000482879 SLC6A1P30531 599 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 BRS3P32247 399 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 DUTP33316 252 aaKnown RBP9.86□□□□□ -0.83
SDC1-206ENST00000482879 THBS3P49746 956 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 EIF4EBP1Q13541 118 aaPredicted RBP9.86□□□□□ -0.83
SDC1-206ENST00000482879 ZNF66Q6ZN08 573 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 ZDHHC22Q8N966 263 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 ZNF383Q8NA42 475 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 ENKURQ8TC29 256 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 ADTRPQ96IZ2 230 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 ZNF48Q96MX3 618 aaPredicted RBP9.86□□□□□ -0.83
SDC1-206ENST00000482879 HSD17B10Q99714 261 aaKnown RBP9.86□□□□□ -0.83
SDC1-206ENST00000482879 SSX3Q99909 188 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 RTBDNQ9BSG5 229 aaPredicted RBP9.86□□□□□ -0.83
SDC1-206ENST00000482879 C5orf66Q9H5L9 145 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 COPZ2Q9P299 210 aa9.86□□□□□ -0.83
SDC1-206ENST00000482879 LINC00473A8K010 186 aa9.85□□□□□ -0.83
SDC1-206ENST00000482879 TCRBP04435 133 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms