RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 CEACAM6P40199 344 aa11.83□□□□□ -0.52
LIMS3-203ENST00000480744 HLA-DRB3P79483 266 aa11.83□□□□□ -0.52
LIMS3-203ENST00000480744 ZNF660Q6AZW8 331 aaPredicted RBP11.83□□□□□ -0.52
LIMS3-203ENST00000480744 MINDY2Q8NBR6 621 aa11.83□□□□□ -0.52
LIMS3-203ENST00000480744 DCUN1D4Q92564 292 aa11.83□□□□□ -0.52
LIMS3-203ENST00000480744 CLCC1Q96S66 551 aa11.83□□□□□ -0.52
LIMS3-203ENST00000480744 YTHDF1Q9BYJ9 559 aaKnown RBP11.83□□□□□ -0.52
LIMS3-203ENST00000480744 LPAR5Q9H1C0 372 aa11.83□□□□□ -0.52
LIMS3-203ENST00000480744 RIMS4Q9H426 269 aaPredicted RBP11.83□□□□□ -0.52
LIMS3-203ENST00000480744 FOXA2Q9Y261 457 aaPredicted RBP11.83□□□□□ -0.52
LIMS3-203ENST00000480744 WASHC3Q9Y3C0 194 aa11.83□□□□□ -0.52
LIMS3-203ENST00000480744 H0YJW9 148 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 OVOL1O14753 267 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 SOX15O60248 233 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 SAP30O75446 220 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 ZBTB25P24278 435 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 MC5RP33032 325 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 INSL3P51460 131 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 SLURP1P55000 103 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 CX3CL1P78423 397 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 FABP5Q01469 135 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 RAB11BQ15907 218 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 UBE2UQ5VVX9 321 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 ZNF773Q6PK81 442 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 EDARADDQ8WWZ3 215 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 GFI1Q99684 422 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 FAM103A1Q9BTL3 118 aaKnown RBP11.82□□□□□ -0.52
LIMS3-203ENST00000480744 C11orf54Q9H0W9 315 aaPredicted RBP11.82□□□□□ -0.52
LIMS3-203ENST00000480744 RNF150Q9ULK6 438 aa11.82□□□□□ -0.52
LIMS3-203ENST00000480744 AK6Q9Y3D8 172 aaKnown RBP11.82□□□□□ -0.52
LIMS3-203ENST00000480744 TRBV6-6A0A0A6YYG2 114 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 FCN1O00602 326 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 SLC17A2O00624 439 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 MRPS14O60783 128 aaKnown RBP11.81□□□□□ -0.52
LIMS3-203ENST00000480744 RBBP9O75884 186 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 SCTP09683 121 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 VEGFCP49767 419 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 CLDN12P56749 244 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 TMEM267Q0VDI3 215 aaPredicted RBP11.81□□□□□ -0.52
LIMS3-203ENST00000480744 KCTD21Q4G0X4 260 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 C19orf54Q5BKX5 351 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 UNQ5815/PRO19632Q6UWF5 114 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 PPP1R27Q86WC6 154 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 DRAXINQ8NBI3 349 aaPredicted RBP11.81□□□□□ -0.52
LIMS3-203ENST00000480744 DLX4Q92988 240 aaPredicted RBP11.81□□□□□ -0.52
LIMS3-203ENST00000480744 C12orf4Q9NQ89 552 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 METTL1Q9UBP6 276 aaKnown RBP11.81□□□□□ -0.52
LIMS3-203ENST00000480744 MGAT4AQ9UM21 535 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 GAB2Q9UQC2 676 aa11.81□□□□□ -0.52
LIMS3-203ENST00000480744 LINC01619G3V211 115 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 ITGB1BP1O14713 200 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 ARL6IP5O75915 188 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 IGHV3-11P01762 117 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 LGALS1P09382 135 aaKnown RBP11.8□□□□□ -0.52
LIMS3-203ENST00000480744 CD37P11049 281 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 ACTBL2Q562R1 376 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 ZNF429Q86V71 674 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 TCTEX1D1Q8N7M0 179 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 OR5AN1Q8NGI8 311 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 ARHGAP5-AS1Q96IT6 56 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 MS4A10Q96PG2 267 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 CMSS1Q9BQ75 279 aaKnown RBP11.8□□□□□ -0.52
LIMS3-203ENST00000480744 AGMATQ9BSE5 352 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 PECRQ9BY49 303 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 TOLLIPQ9H0E2 274 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 GHITMQ9H3K2 345 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 Q9N2K0 584 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 NDUFB11Q9NX14 153 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 ZNF221Q9UK13 617 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 HSF4Q9ULV5 492 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 NUBP2Q9Y5Y2 271 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 SMAD5-AS1Q9Y6J3 95 aa11.8□□□□□ -0.52
LIMS3-203ENST00000480744 IGHV4OR15-8A0A075B7B6 117 aa11.79□□□□□ -0.52
LIMS3-203ENST00000480744 A0A087WW49 117 aa11.79□□□□□ -0.52
LIMS3-203ENST00000480744 CA2P00918 260 aa11.79□□□□□ -0.52
LIMS3-203ENST00000480744 EGR2P11161 476 aaPredicted RBP11.79□□□□□ -0.52
LIMS3-203ENST00000480744 SNRPBP14678 240 aaKnown RBP11.79□□□□□ -0.52
LIMS3-203ENST00000480744 CALRP27797 417 aaKnown RBP11.79□□□□□ -0.52
LIMS3-203ENST00000480744 CRIP2P52943 208 aaPredicted RBP11.79□□□□□ -0.52
LIMS3-203ENST00000480744 TPPP2P59282 170 aa11.79□□□□□ -0.52
LIMS3-203ENST00000480744 RPS16P62249 146 aaKnown RBP11.79□□□□□ -0.52
LIMS3-203ENST00000480744 PSG5Q15238 335 aa11.79□□□□□ -0.52
LIMS3-203ENST00000480744 TRAM1Q15629 374 aa11.79□□□□□ -0.52
LIMS3-203ENST00000480744 PYHIN1Q6K0P9 492 aa11.79□□□□□ -0.52
LIMS3-203ENST00000480744 FAM89BQ8N5H3 189 aa11.79□□□□□ -0.52
LIMS3-203ENST00000480744 LFNGQ8NES3 379 aa11.79□□□□□ -0.52
LIMS3-203ENST00000480744 SHISA3A0PJX4 238 aa11.78□□□□□ -0.52
LIMS3-203ENST00000480744 FOXI3A8MTJ6 420 aaPredicted RBP11.78□□□□□ -0.52
LIMS3-203ENST00000480744 APOA2P02652 100 aa11.78□□□□□ -0.52
LIMS3-203ENST00000480744 PSMA1P25786 263 aaKnown RBP11.78□□□□□ -0.52
LIMS3-203ENST00000480744 PSMB9P28065 219 aa11.78□□□□□ -0.52
LIMS3-203ENST00000480744 CD40LGP29965 261 aa11.78□□□□□ -0.52
LIMS3-203ENST00000480744 TMEM50BP56557 158 aa11.78□□□□□ -0.52
LIMS3-203ENST00000480744 LINC00205P59089 165 aa11.78□□□□□ -0.52
LIMS3-203ENST00000480744 MRPS15P82914 257 aaKnown RBP11.78□□□□□ -0.52
LIMS3-203ENST00000480744 HES5Q5TA89 166 aa11.78□□□□□ -0.52
LIMS3-203ENST00000480744 CD200R1LQ6Q8B3 271 aa11.78□□□□□ -0.52
LIMS3-203ENST00000480744 ZNF383Q8NA42 475 aa11.78□□□□□ -0.52
LIMS3-203ENST00000480744 OR56B1Q8NGI3 324 aa11.78□□□□□ -0.52
LIMS3-203ENST00000480744 GRPEL2Q8TAA5 225 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms