RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SCAF4O95104 1147 aaKnown RBP11.52□□□□□ -0.56
CCDC88A-211ENST00000471947 NCR3LG1Q68D85 454 aa11.52□□□□□ -0.56
CCDC88A-211ENST00000471947 AIFM2Q9BRQ8 373 aa11.52□□□□□ -0.56
CCDC88A-211ENST00000471947 VSIRQ9H7M9 311 aa11.52□□□□□ -0.56
CCDC88A-211ENST00000471947 SLC39A9Q9NUM3 307 aa11.52□□□□□ -0.56
CCDC88A-211ENST00000471947 MYO9AB2RTY4 2548 aa11.52□□□□□ -0.56
CCDC88A-211ENST00000471947 ABCA12Q86UK0 2595 aa11.52□□□□□ -0.56
CCDC88A-211ENST00000471947 CCL3L1P16619 93 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 COX7A1P24310 79 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 Q6P435 159 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 PRR7Q8TB68 274 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 TMPRSS5Q9H3S3 457 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 ZNF665Q9H7R5 613 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 PATZ1Q9HBE1 687 aaKnown RBP11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 CHD3Q12873 2000 aaKnown RBP11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 hCG_1809904A0A1W2PP81 198 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 A0A1W2PR64 198 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 A0A1W2PRV1 198 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 COL8A2P25067 703 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 BSPH1Q075Z2 132 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 TMEM108Q6UXF1 575 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 COQ2Q96H96 371 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 ENY2Q9NPA8 101 aa11.52□□□□□ -0.57
CCDC88A-211ENST00000471947 ODAMA1E959 279 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 TAAR5O14804 337 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 SNAPINO95295 136 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 RPS10P46783 165 aaKnown RBP11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 ZNF324BQ6AW86 544 aaPredicted RBP11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 Q8IYB0 196 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 ABHD12Q8N2K0 398 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 FAM122AQ96E09 287 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 BOD1Q96IK1 185 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 COL25A1Q9BXS0 654 aaPredicted RBP11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 FAM117AQ9C073 453 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 MMP26Q9NRE1 261 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 HSPB1P04792 205 aaKnown RBP11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 RAB2AP61019 212 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 SLC38A11Q08AI6 406 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 MSMO1Q15800 293 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 GLRX5Q86SX6 157 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 LHX4Q969G2 390 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 IL36GQ9NZH8 169 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 PLA2G2EQ9NZK7 142 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 UBE2KP61086 200 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 DAZAP2Q15038 168 aaPredicted RBP11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 GALNT14Q96FL9 552 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 S1PR3Q99500 378 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 PKIBQ9C010 78 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 SAP30LQ9HAJ7 183 aa11.51□□□□□ -0.57
CCDC88A-211ENST00000471947 TUBAL3A6NHL2 446 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 A8MXK9 166 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 SLC31A2O15432 143 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 HLA-GP17693 338 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 ADCYAP1P18509 176 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 IL13RA2Q14627 380 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 P2RY6Q15077 328 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 DOLPP1Q86YN1 238 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 H1FOOQ8IZA3 346 aaPredicted RBP11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 C18orf12Q96KH6 178 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 NAV3Q8IVL0 2385 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 TRBV6-7A0A0A0MS04 114 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 SNAPC5O75971 98 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 CDS2O95674 445 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 FGF7P21781 194 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 GNB1P62873 340 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 R3HDM4Q96D70 268 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 OR4C12Q96R67 309 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 PBDC1Q9BVG4 233 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 ASH1LQ9NR48 2969 aaKnown RBP11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 ZFP57Q9NU63 452 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 OOEPA6NGQ2 149 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 IQCF6A8MYZ5 107 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 CCL21O00585 134 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 SHOXO15266 292 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 TAGLN2P37802 199 aaKnown RBP11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 P2RY1P47900 373 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 AWAT1Q58HT5 328 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 LHFPL4Q7Z7J7 247 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 GCM1Q9NP62 436 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 ABCA2Q9BZC7 2435 aa11.5□□□□□ -0.57
CCDC88A-211ENST00000471947 A0A1W2PPH5 198 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 IGKV1-5P01602 117 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 CD40P25942 277 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 GRNP28799 593 aaKnown RBP11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 CASP6P55212 293 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 ZNF787Q6DD87 383 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 ASCL4Q6XD76 172 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 GCSAMQ8N6F7 178 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 PHYHIPLQ96FC7 376 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 MEGF10Q96KG7 1140 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 A0A0G2JNJ9 132 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 RD3LP0DJH9 198 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 NRN1LQ496H8 165 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 ABHD5Q8WTS1 349 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 Q9UFV3 132 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 TRGV10A0A0A0MS01 117 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 TRAV3A0A0B4J244 114 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 LINC00473A8K010 186 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 IGHG3P01860 377 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 MMP9P14780 707 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms