RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 HSPA12AO43301 675 aa13.52□□□□□ -0.25
COL7A1-208ENST00000470076 SAP30O75446 220 aa13.52□□□□□ -0.25
COL7A1-208ENST00000470076 EGR2P11161 476 aaPredicted RBP13.52□□□□□ -0.25
COL7A1-208ENST00000470076 ARSBP15848 533 aa13.52□□□□□ -0.25
COL7A1-208ENST00000470076 AKIRIN2Q53H80 203 aa13.52□□□□□ -0.25
COL7A1-208ENST00000470076 ACTBL2Q562R1 376 aa13.52□□□□□ -0.25
COL7A1-208ENST00000470076 LIPKQ5VXJ0 399 aa13.52□□□□□ -0.25
COL7A1-208ENST00000470076 PPP1R27Q86WC6 154 aa13.52□□□□□ -0.25
COL7A1-208ENST00000470076 UFD1Q92890 307 aa13.52□□□□□ -0.25
COL7A1-208ENST00000470076 PTX4Q96A99 478 aa13.52□□□□□ -0.25
COL7A1-208ENST00000470076 C11orf54Q9H0W9 315 aaPredicted RBP13.52□□□□□ -0.25
COL7A1-208ENST00000470076 PLGRKTQ9HBL7 147 aa13.52□□□□□ -0.25
COL7A1-208ENST00000470076 C12orf4Q9NQ89 552 aa13.52□□□□□ -0.25
COL7A1-208ENST00000470076 TPSG1Q9NRR2 321 aa13.52□□□□□ -0.25
COL7A1-208ENST00000470076 OR1A1Q9P1Q5 309 aa13.52□□□□□ -0.25
COL7A1-208ENST00000470076 SLC17A2O00624 439 aa13.51□□□□□ -0.25
COL7A1-208ENST00000470076 CD40LGP29965 261 aa13.51□□□□□ -0.25
COL7A1-208ENST00000470076 SLURP1P55000 103 aa13.51□□□□□ -0.25
COL7A1-208ENST00000470076 IRF3Q14653 427 aa13.51□□□□□ -0.25
COL7A1-208ENST00000470076 ZNF562Q6V9R5 426 aa13.51□□□□□ -0.25
COL7A1-208ENST00000470076 CASTOR1Q8WTX7 329 aa13.51□□□□□ -0.25
COL7A1-208ENST00000470076 TMEM203Q969S6 136 aa13.51□□□□□ -0.25
COL7A1-208ENST00000470076 TSNAXQ99598 290 aaKnown RBP13.51□□□□□ -0.25
COL7A1-208ENST00000470076 HDHD3Q9BSH5 251 aaPredicted RBP13.51□□□□□ -0.25
COL7A1-208ENST00000470076 Q9N2K0 584 aa13.51□□□□□ -0.25
COL7A1-208ENST00000470076 METTL1Q9UBP6 276 aaKnown RBP13.51□□□□□ -0.25
COL7A1-208ENST00000470076 IGHV4OR15-8A0A075B7B6 117 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 A0A087WW49 117 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 FOXI3A8MTJ6 420 aaPredicted RBP13.5□□□□□ -0.25
COL7A1-208ENST00000470076 C3orf84H3BNL1 204 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 ARL6IP5O75915 188 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 SPDEFO95238 335 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 OR8U9P0C7N5 309 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 CPEP16870 476 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 RANBP1P43487 201 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 PSG5Q15238 335 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 P2RY14Q15391 338 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 TRAM1Q15629 374 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 ACSM6Q6P461 480 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 UNQ5815/PRO19632Q6UWF5 114 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 OR6Q1Q8NGQ2 317 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 FLYWCH2Q96CP2 140 aaKnown RBP13.5□□□□□ -0.25
COL7A1-208ENST00000470076 GFI1Q99684 422 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 SLA2Q9H6Q3 261 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 ZNF221Q9UK13 617 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 GAB2Q9UQC2 676 aa13.5□□□□□ -0.25
COL7A1-208ENST00000470076 ARPC1BO15143 372 aaKnown RBP13.49□□□□□ -0.25
COL7A1-208ENST00000470076 PROP1O75360 226 aa13.49□□□□□ -0.25
COL7A1-208ENST00000470076 HSPB1P04792 205 aaKnown RBP13.49□□□□□ -0.25
COL7A1-208ENST00000470076 TFAP2AP05549 437 aa13.49□□□□□ -0.25
COL7A1-208ENST00000470076 SCTP09683 121 aa13.49□□□□□ -0.25
COL7A1-208ENST00000470076 SPNP16150 400 aa13.49□□□□□ -0.25
COL7A1-208ENST00000470076 PSMA1P25786 263 aaKnown RBP13.49□□□□□ -0.25
COL7A1-208ENST00000470076 TMEM50BP56557 158 aa13.49□□□□□ -0.25
COL7A1-208ENST00000470076 TPBGQ13641 420 aa13.49□□□□□ -0.25
COL7A1-208ENST00000470076 RAB11BQ15907 218 aa13.49□□□□□ -0.25
COL7A1-208ENST00000470076 TMEM91Q6ZNR0 172 aa13.49□□□□□ -0.25
COL7A1-208ENST00000470076 DRAXINQ8NBI3 349 aaPredicted RBP13.49□□□□□ -0.25
COL7A1-208ENST00000470076 LFNGQ8NES3 379 aa13.49□□□□□ -0.25
COL7A1-208ENST00000470076 ARHGAP5-AS1Q96IT6 56 aa13.49□□□□□ -0.25
COL7A1-208ENST00000470076 CLCC1Q96S66 551 aa13.49□□□□□ -0.25
COL7A1-208ENST00000470076 CMSS1Q9BQ75 279 aaKnown RBP13.49□□□□□ -0.25
COL7A1-208ENST00000470076 FAM103A1Q9BTL3 118 aaKnown RBP13.49□□□□□ -0.25
COL7A1-208ENST00000470076 TPRKBQ9Y3C4 175 aa13.49□□□□□ -0.25
COL7A1-208ENST00000470076 AK6Q9Y3D8 172 aaKnown RBP13.49□□□□□ -0.25
COL7A1-208ENST00000470076 HUWE1Q7Z6Z7 4374 aaKnown RBP13.48□□□□□ -0.25
COL7A1-208ENST00000470076 CA2P00918 260 aa13.48□□□□□ -0.25
COL7A1-208ENST00000470076 IGHV3-11P01762 117 aa13.48□□□□□ -0.25
COL7A1-208ENST00000470076 APOA2P02652 100 aa13.48□□□□□ -0.25
COL7A1-208ENST00000470076 IGKV1-16P04430 117 aa13.48□□□□□ -0.25
COL7A1-208ENST00000470076 VEGFCP49767 419 aa13.48□□□□□ -0.25
COL7A1-208ENST00000470076 TPPP2P59282 170 aa13.48□□□□□ -0.25
COL7A1-208ENST00000470076 RPS16P62249 146 aaKnown RBP13.48□□□□□ -0.25
COL7A1-208ENST00000470076 PITPNAQ00169 270 aa13.48□□□□□ -0.25
COL7A1-208ENST00000470076 PDPNQ86YL7 162 aa13.48□□□□□ -0.25
COL7A1-208ENST00000470076 ZNF383Q8NA42 475 aa13.48□□□□□ -0.25
COL7A1-208ENST00000470076 OR56B1Q8NGI3 324 aa13.48□□□□□ -0.25
COL7A1-208ENST00000470076 ARPC1AQ92747 370 aa13.48□□□□□ -0.25
COL7A1-208ENST00000470076 MS4A10Q96PG2 267 aa13.48□□□□□ -0.25
COL7A1-208ENST00000470076 PECRQ9BY49 303 aa13.48□□□□□ -0.25
COL7A1-208ENST00000470076 TRDCB7Z8K6 153 aa13.47□□□□□ -0.25
COL7A1-208ENST00000470076 HSMCR30P0CW71 290 aa13.47□□□□□ -0.25
COL7A1-208ENST00000470076 GP9P14770 177 aa13.47□□□□□ -0.25
COL7A1-208ENST00000470076 SERPINB10P48595 397 aa13.47□□□□□ -0.25
COL7A1-208ENST00000470076 RPS25P62851 125 aaKnown RBP13.47□□□□□ -0.25
COL7A1-208ENST00000470076 SBSPONQ8IVN8 264 aa13.47□□□□□ -0.25
COL7A1-208ENST00000470076 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-208ENST00000470076 RHOVQ96L33 236 aa13.47□□□□□ -0.25
COL7A1-208ENST00000470076 OR4C12Q96R67 309 aa13.47□□□□□ -0.25
COL7A1-208ENST00000470076 DUSP21Q9H596 190 aa13.47□□□□□ -0.25
COL7A1-208ENST00000470076 RDH8Q9NYR8 311 aa13.47□□□□□ -0.25
COL7A1-208ENST00000470076 IGKV1-6A0A0C4DH72 117 aa13.46□□□□□ -0.25
COL7A1-208ENST00000470076 TRGV3P03979 118 aa13.46□□□□□ -0.25
COL7A1-208ENST00000470076 PSMD7P51665 324 aa13.46□□□□□ -0.25
COL7A1-208ENST00000470076 MLLT11Q13015 90 aaPredicted RBP13.46□□□□□ -0.25
COL7A1-208ENST00000470076 FXYD3Q14802 87 aa13.46□□□□□ -0.25
COL7A1-208ENST00000470076 OR4A4PQ8NGN8 299 aa13.46□□□□□ -0.25
COL7A1-208ENST00000470076 FAM3DQ96BQ1 224 aa13.46□□□□□ -0.25
COL7A1-208ENST00000470076 RCHY1Q96PM5 261 aa13.46□□□□□ -0.25
COL7A1-208ENST00000470076 DNAH7Q8WXX0 4024 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms