RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 RNF150Q9ULK6 438 aa16.26■□□□□ 0.19
COL9A3-207ENST00000467819 DYNC2H1Q8NCM8 4307 aaKnown RBP16.26■□□□□ 0.19
COL9A3-207ENST00000467819 PTGES3LE9PB15 166 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 RBBP9O75884 186 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 GP9P14770 177 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 CEACAM6P40199 344 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 TPPP2P59282 170 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 P2RY14Q15391 338 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 SPHARQ15513 63 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 MED22Q15528 200 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 ACSM6Q6P461 480 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 CD200R1LQ6Q8B3 271 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 OR5AN1Q8NGI8 311 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 OR6M1Q8NGM8 313 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 EDARADDQ8WWZ3 215 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 RCHY1Q96PM5 261 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 AGMATQ9BSE5 352 aa16.25■□□□□ 0.19
COL9A3-207ENST00000467819 C11orf54Q9H0W9 315 aaPredicted RBP16.25■□□□□ 0.19
COL9A3-207ENST00000467819 LSM2Q9Y333 95 aaKnown RBP16.25■□□□□ 0.19
COL9A3-207ENST00000467819 TRBV6-6A0A0A6YYG2 114 aa16.24■□□□□ 0.19
COL9A3-207ENST00000467819 ITGB1BP1O14713 200 aa16.24■□□□□ 0.19
COL9A3-207ENST00000467819 ZBTB25P24278 435 aa16.24■□□□□ 0.19
COL9A3-207ENST00000467819 PITPNAQ00169 270 aa16.24■□□□□ 0.19
COL9A3-207ENST00000467819 PSG5Q15238 335 aa16.24■□□□□ 0.19
COL9A3-207ENST00000467819 PYHIN1Q6K0P9 492 aa16.24■□□□□ 0.19
COL9A3-207ENST00000467819 LFNGQ8NES3 379 aa16.24■□□□□ 0.19
COL9A3-207ENST00000467819 OR6Q1Q8NGQ2 317 aa16.24■□□□□ 0.19
COL9A3-207ENST00000467819 URM1Q9BTM9 101 aaKnown RBP16.24■□□□□ 0.19
COL9A3-207ENST00000467819 RIMS4Q9H426 269 aaPredicted RBP16.24■□□□□ 0.19
COL9A3-207ENST00000467819 PLGRKTQ9HBL7 147 aa16.24■□□□□ 0.19
COL9A3-207ENST00000467819 CA2P00918 260 aa16.23■□□□□ 0.19
COL9A3-207ENST00000467819 SCTP09683 121 aa16.23■□□□□ 0.19
COL9A3-207ENST00000467819 UCHL1P09936 223 aa16.23■□□□□ 0.19
COL9A3-207ENST00000467819 OR8U9P0C7N5 309 aa16.23■□□□□ 0.19
COL9A3-207ENST00000467819 FRMD6-AS1P0C7T7 363 aa16.23■□□□□ 0.19
COL9A3-207ENST00000467819 CPEP16870 476 aa16.23■□□□□ 0.19
COL9A3-207ENST00000467819 LINC00205P59089 165 aa16.23■□□□□ 0.19
COL9A3-207ENST00000467819 AKIRIN2Q53H80 203 aa16.23■□□□□ 0.19
COL9A3-207ENST00000467819 LIPKQ5VXJ0 399 aa16.23■□□□□ 0.19
COL9A3-207ENST00000467819 RNLSQ5VYX0 342 aa16.23■□□□□ 0.19
COL9A3-207ENST00000467819 MUC7Q8TAX7 377 aa16.23■□□□□ 0.19
COL9A3-207ENST00000467819 TMEM203Q969S6 136 aa16.23■□□□□ 0.19
COL9A3-207ENST00000467819 TRIM64CA6NLI5 447 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 CASQ2O14958 399 aaPredicted RBP16.22■□□□□ 0.19
COL9A3-207ENST00000467819 IGKV1-16P04430 117 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 HSPB1P04792 205 aaKnown RBP16.22■□□□□ 0.19
COL9A3-207ENST00000467819 CD37P11049 281 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 ARSBP15848 533 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 CD40LGP29965 261 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 RPS16P62249 146 aaKnown RBP16.22■□□□□ 0.19
COL9A3-207ENST00000467819 SRSF7Q16629 238 aaKnown RBP eCLIP16.22■□□□□ 0.19
COL9A3-207ENST00000467819 ZNF562Q6V9R5 426 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 HAPLN4Q86UW8 402 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 UFD1Q92890 307 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 FLYWCH2Q96CP2 140 aaKnown RBP16.22■□□□□ 0.19
COL9A3-207ENST00000467819 OR4C12Q96R67 309 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 TSNAXQ99598 290 aaKnown RBP16.22■□□□□ 0.19
COL9A3-207ENST00000467819 GFI1Q99684 422 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 RNF5Q99942 180 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 Q9N2K0 584 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 ZNF221Q9UK13 617 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 MGAT4AQ9UM21 535 aa16.22■□□□□ 0.19
COL9A3-207ENST00000467819 PROP1O75360 226 aa16.21■□□□□ 0.19
COL9A3-207ENST00000467819 TRGV3P03979 118 aa16.21■□□□□ 0.19
COL9A3-207ENST00000467819 ZNF383Q8NA42 475 aa16.21■□□□□ 0.19
COL9A3-207ENST00000467819 GRPEL2Q8TAA5 225 aa16.21■□□□□ 0.19
COL9A3-207ENST00000467819 ARHGAP5-AS1Q96IT6 56 aa16.21■□□□□ 0.19
COL9A3-207ENST00000467819 RHOVQ96L33 236 aa16.21■□□□□ 0.19
COL9A3-207ENST00000467819 VCXQ9H320 206 aa16.21■□□□□ 0.19
COL9A3-207ENST00000467819 C12orf4Q9NQ89 552 aa16.21■□□□□ 0.19
COL9A3-207ENST00000467819 AK6Q9Y3D8 172 aaKnown RBP16.21■□□□□ 0.19
COL9A3-207ENST00000467819 SLC17A2O00624 439 aa16.2■□□□□ 0.18
COL9A3-207ENST00000467819 SLC25A17O43808 307 aa16.2■□□□□ 0.18
COL9A3-207ENST00000467819 APOA2P02652 100 aa16.2■□□□□ 0.18
COL9A3-207ENST00000467819 TFAP2AP05549 437 aa16.2■□□□□ 0.18
COL9A3-207ENST00000467819 VEGFCP49767 419 aa16.2■□□□□ 0.18
COL9A3-207ENST00000467819 TMEM50BP56557 158 aa16.2■□□□□ 0.18
COL9A3-207ENST00000467819 FAM89BQ8N5H3 189 aa16.2■□□□□ 0.18
COL9A3-207ENST00000467819 CMSS1Q9BQ75 279 aaKnown RBP16.2■□□□□ 0.18
COL9A3-207ENST00000467819 SLA2Q9H6Q3 261 aa16.2■□□□□ 0.18
COL9A3-207ENST00000467819 ZNF355PQ9NSJ1 428 aa16.2■□□□□ 0.18
COL9A3-207ENST00000467819 SCN3BQ9NY72 215 aa16.2■□□□□ 0.18
COL9A3-207ENST00000467819 HSF4Q9ULV5 492 aa16.2■□□□□ 0.18
COL9A3-207ENST00000467819 IGKV1-6A0A0C4DH72 117 aa16.19■□□□□ 0.18
COL9A3-207ENST00000467819 FOXI3A8MTJ6 420 aaPredicted RBP16.19■□□□□ 0.18
COL9A3-207ENST00000467819 SPDEFO95238 335 aa16.19■□□□□ 0.18
COL9A3-207ENST00000467819 HSMCR30P0CW71 290 aa16.19■□□□□ 0.18
COL9A3-207ENST00000467819 CLDN12P56749 244 aa16.19■□□□□ 0.18
COL9A3-207ENST00000467819 RPS25P62851 125 aaKnown RBP16.19■□□□□ 0.18
COL9A3-207ENST00000467819 FXYD3Q14802 87 aa16.19■□□□□ 0.18
COL9A3-207ENST00000467819 RAB11BQ15907 218 aa16.19■□□□□ 0.18
COL9A3-207ENST00000467819 CASC10Q5T4H9 136 aa16.19■□□□□ 0.18
COL9A3-207ENST00000467819 TMEM91Q6ZNR0 172 aa16.19■□□□□ 0.18
COL9A3-207ENST00000467819 PDPNQ86YL7 162 aa16.19■□□□□ 0.18
COL9A3-207ENST00000467819 PTX4Q96A99 478 aa16.19■□□□□ 0.18
COL9A3-207ENST00000467819 RSRP1Q9BUV0 290 aa16.19■□□□□ 0.18
COL9A3-207ENST00000467819 PECRQ9BY49 303 aa16.19■□□□□ 0.18
COL9A3-207ENST00000467819 ZMAT4Q9H898 229 aa16.19■□□□□ 0.18
COL9A3-207ENST00000467819 M0R1X1 148 aa16.18■□□□□ 0.18
COL9A3-207ENST00000467819 ARPC1BO15143 372 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 132.8 ms