RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 COX7A1P24310 79 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 AESQ08117 197 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 ASCL5Q7RTU5 278 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 A0A1B0GTI1 187 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 AGAP20933 346 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 FHITP49789 147 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 FOXL2P58012 376 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 LINC00114Q6XXX2 140 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 FSCN3Q9NQT6 498 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 ATG2BQ96BY7 2078 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 A0A087WWC5 75 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 RIPPLY2Q5TAB7 128 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 CLEC5AQ9NY25 188 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 SPAARA0A1B0GVQ0 90 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 A8MWL6 223 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 VENTXO95231 258 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 SLC22A18ASQ8N1D0 253 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 LINC00469Q8N7U9 141 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 GRAMD2BQ96HH9 432 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 HARBI1Q96MB7 349 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 PAXXQ9BUH6 204 aa16.39■□□□□ 0.21
CCDC88B-204ENST00000463837 TRAV14DV4A0A0A6YYC5 116 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 F5H697 171 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 GOSR1O95249 250 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 SPATA45Q537H7 98 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 OR8A1Q8NGG7 326 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 TM2D1Q9BX74 207 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 SIAH2O43255 324 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 WNT5AP41221 380 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 PQLC2Q6ZP29 291 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 MDP1Q86V88 176 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 ZFP30Q9Y2G7 519 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 SIPA1L1O43166 1804 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 COX5BP10606 129 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 MFAP2P55001 183 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 MOGAT3Q86VF5 341 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 GALNT14Q96FL9 552 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 PRDM14Q9GZV8 571 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 B4E171 279 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 CLDN14O95500 239 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 SPTBP11277 2137 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 TSPAN7P41732 249 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 C10orf128Q5T292 105 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 COLQQ9Y215 455 aaPredicted RBP16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 UFC1Q9Y3C8 167 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 RALGAPA2Q2PPJ7 1873 aa16.38■□□□□ 0.21
CCDC88B-204ENST00000463837 HINT1P49773 126 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 FGFRL1Q8N441 504 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 RASL11BQ9BPW5 248 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 A0A1B0GV90 55 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 RPL7P18124 248 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 TGIF1Q15583 401 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 TMEM45BQ96B21 275 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 MRPL18Q9H0U6 180 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 CDX4O14627 284 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 MGST3O14880 152 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 SELENOTP62341 195 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 UNC119Q13432 240 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 C2orf68Q2NKX9 166 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 IBA57Q5T440 356 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 PMS2CLQ68D20 193 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 COL25A1Q9BXS0 654 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 WIPI2Q9Y4P8 454 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 SNCGO76070 127 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 TNFRSF9Q07011 255 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 C12orf54Q6X4T0 127 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 GCSAMQ8N6F7 178 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 DPF1Q92782 380 aa16.37■□□□□ 0.21
CCDC88B-204ENST00000463837 COL10A1Q03692 680 aa16.36■□□□□ 0.21
CCDC88B-204ENST00000463837 NR2C2APQ86WQ0 139 aa16.36■□□□□ 0.21
CCDC88B-204ENST00000463837 TGIF2LYQ8IUE0 185 aa16.36■□□□□ 0.21
CCDC88B-204ENST00000463837 GPHA2Q96T91 129 aa16.36■□□□□ 0.21
CCDC88B-204ENST00000463837 SPOCK3Q9BQ16 436 aa16.36■□□□□ 0.21
CCDC88B-204ENST00000463837 GSN-AS1Q9NRJ2 163 aa16.36■□□□□ 0.21
CCDC88B-204ENST00000463837 OR2H2O95918 312 aa16.36■□□□□ 0.21
CCDC88B-204ENST00000463837 AMY1AP04745 511 aa16.36■□□□□ 0.21
CCDC88B-204ENST00000463837 DCAF10Q5QP82 559 aa16.36■□□□□ 0.21
CCDC88B-204ENST00000463837 CHRNA10Q9GZZ6 450 aa16.36■□□□□ 0.21
CCDC88B-204ENST00000463837 ORM1P02763 201 aa16.36■□□□□ 0.21
CCDC88B-204ENST00000463837 TMEM140Q9NV12 185 aa16.36■□□□□ 0.21
CCDC88B-204ENST00000463837 J3QRE1 110 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 PRDX2P32119 198 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 HERVK_113P61574 105 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 SLC35E4Q6ICL7 350 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 ZNF646O15015 1829 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 TMPRSS2O15393 492 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 ATRAIDQ6UW56 229 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 SPTA1P02549 2419 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 LCN2P80188 198 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 GBGT1Q8N5D6 347 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 PRR7Q8TB68 274 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 QTRT1Q9BXR0 403 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 MS4A5Q9H3V2 200 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 MSGN1A6NI15 193 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 PCP4P48539 62 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 TCTAP57738 103 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 SNAI3Q3KNW1 292 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 SFXN3Q9BWM7 321 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 PARLQ9H300 379 aa16.35■□□□□ 0.21
CCDC88B-204ENST00000463837 ASCL3Q9NQ33 180 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms