RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 A8MZ25 164 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 H0YJW9 148 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 CNIH1O95406 144 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 BPNT1O95861 308 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 IFNA6P05013 189 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 IGHV4-30-4P0DP06 118 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 HTR2CP28335 458 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 RANBP1P43487 201 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 PSG5Q15238 335 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 ACSM3Q53FZ2 586 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 PHYHIPQ92561 330 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 TMEM68Q96MH6 324 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 TM2D3Q9BRN9 247 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 URM1Q9BTM9 101 aaKnown RBP10.23□□□□□ -0.77
HMGB3-204ENST00000448905 TUBA4BQ9H853 241 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 FBXO7Q9Y3I1 522 aa10.23□□□□□ -0.77
HMGB3-204ENST00000448905 LCE6AA0A183 80 aa10.22□□□□□ -0.77
HMGB3-204ENST00000448905 H3BUA1 57 aa10.22□□□□□ -0.77
HMGB3-204ENST00000448905 SPDEFO95238 335 aa10.22□□□□□ -0.77
HMGB3-204ENST00000448905 NAPSAO96009 420 aa10.22□□□□□ -0.77
HMGB3-204ENST00000448905 IGLV1-51P01701 117 aa10.22□□□□□ -0.77
HMGB3-204ENST00000448905 APOA2P02652 100 aa10.22□□□□□ -0.77
HMGB3-204ENST00000448905 NDPQ00604 133 aa10.22□□□□□ -0.77
HMGB3-204ENST00000448905 FXYD3Q14802 87 aa10.22□□□□□ -0.77
HMGB3-204ENST00000448905 C1orf100Q5SVJ3 147 aa10.22□□□□□ -0.77
HMGB3-204ENST00000448905 GLDNQ6ZMI3 551 aaPredicted RBP10.22□□□□□ -0.77
HMGB3-204ENST00000448905 SVOPQ8N4V2 548 aa10.22□□□□□ -0.77
HMGB3-204ENST00000448905 PACRGLQ8N7B6 248 aa10.22□□□□□ -0.77
HMGB3-204ENST00000448905 ABHD14BQ96IU4 210 aa10.22□□□□□ -0.77
HMGB3-204ENST00000448905 FAM103A1Q9BTL3 118 aaKnown RBP10.22□□□□□ -0.77
HMGB3-204ENST00000448905 C11orf54Q9H0W9 315 aaPredicted RBP10.22□□□□□ -0.77
HMGB3-204ENST00000448905 ERICH4A6NGS2 130 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 CA2P00918 260 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 ARSBP15848 533 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 SRMP19623 302 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 AADACP22760 399 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 LGALS7P47929 136 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 CBX3Q13185 183 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 ZFAND6Q6FIF0 208 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 OR10K2Q6IF99 312 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 ZNF880Q6PDB4 577 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 GTSCR1Q86UQ5 136 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 PDPNQ86YL7 162 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 C8orf59Q8N0T1 100 aaPredicted RBP10.21□□□□□ -0.77
HMGB3-204ENST00000448905 Q8N1Y9 231 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 NANOGP1Q8N7R0 232 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 OR5T1Q8NG75 326 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 SPATA25Q9BR10 227 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 AGMATQ9BSE5 352 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 TM2D1Q9BX74 207 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 PLCXD1Q9NUJ7 323 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 C19orf73Q9NVV2 129 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 PSORS1C1Q9UIG5 152 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 GAB2Q9UQC2 676 aa10.21□□□□□ -0.77
HMGB3-204ENST00000448905 TENM2Q9NT68 2774 aa10.2□□□□□ -0.78
HMGB3-204ENST00000448905 TRBV6-6A0A0A6YYG2 114 aa10.2□□□□□ -0.78
HMGB3-204ENST00000448905 VEGFCP49767 419 aa10.2□□□□□ -0.78
HMGB3-204ENST00000448905 EPPK1P58107 5090 aaKnown RBP10.2□□□□□ -0.78
HMGB3-204ENST00000448905 KLF5Q13887 457 aaPredicted RBP10.2□□□□□ -0.78
HMGB3-204ENST00000448905 HSD17B12Q53GQ0 312 aa10.2□□□□□ -0.78
HMGB3-204ENST00000448905 RBM48Q5RL73 367 aaKnown RBP10.2□□□□□ -0.78
HMGB3-204ENST00000448905 CEACAM19Q7Z692 300 aa10.2□□□□□ -0.78
HMGB3-204ENST00000448905 POC5Q8NA72 575 aa10.2□□□□□ -0.78
HMGB3-204ENST00000448905 DRAXINQ8NBI3 349 aaPredicted RBP10.2□□□□□ -0.78
HMGB3-204ENST00000448905 BPIFB6Q8NFQ5 453 aa10.2□□□□□ -0.78
HMGB3-204ENST00000448905 GRPEL2Q8TAA5 225 aa10.2□□□□□ -0.78
HMGB3-204ENST00000448905 IL17DQ8TAD2 202 aa10.2□□□□□ -0.78
HMGB3-204ENST00000448905 PTX4Q96A99 478 aa10.2□□□□□ -0.78
HMGB3-204ENST00000448905 ANKRD34BA5PLL1 514 aa10.19□□□□□ -0.78
HMGB3-204ENST00000448905 SERPINB10P48595 397 aa10.19□□□□□ -0.78
HMGB3-204ENST00000448905 MRPS15P82914 257 aaKnown RBP10.19□□□□□ -0.78
HMGB3-204ENST00000448905 TAGLNQ01995 201 aaKnown RBP10.19□□□□□ -0.78
HMGB3-204ENST00000448905 AHSA2Q719I0 299 aa10.19□□□□□ -0.78
HMGB3-204ENST00000448905 OR6M1Q8NGM8 313 aa10.19□□□□□ -0.78
HMGB3-204ENST00000448905 OR9G4Q8NGQ1 327 aa10.19□□□□□ -0.78
HMGB3-204ENST00000448905 USMG5Q96IX5 58 aa10.19□□□□□ -0.78
HMGB3-204ENST00000448905 TMED9Q9BVK6 235 aa10.19□□□□□ -0.78
HMGB3-204ENST00000448905 PEF1Q9UBV8 284 aaKnown RBP10.19□□□□□ -0.78
HMGB3-204ENST00000448905 HSF4Q9ULV5 492 aa10.19□□□□□ -0.78
HMGB3-204ENST00000448905 TMEM14DPA8MWL7 114 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 EBAG9O00559 213 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 SLC25A17O43808 307 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 BRI3O95415 125 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 IGKV1-16P04430 117 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 HLA-DRB3P79483 266 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 LCN12Q6JVE5 192 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 LRRTM1Q86UE6 522 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.18□□□□□ -0.78
HMGB3-204ENST00000448905 NICN1Q9BSH3 213 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 MND1Q9BWT6 205 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 EDA2RQ9HAV5 297 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 PLGRKTQ9HBL7 147 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 Q9N2K0 584 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 C12orf4Q9NQ89 552 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 SLC35D1Q9NTN3 355 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 OR1A1Q9P1Q5 309 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 AK3Q9UIJ7 227 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 SACSQ9NZJ4 4579 aa10.18□□□□□ -0.78
HMGB3-204ENST00000448905 HUWE1Q7Z6Z7 4374 aaKnown RBP10.18□□□□□ -0.78
HMGB3-204ENST00000448905 TRDCB7Z8K6 153 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms