RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 LOC102724200A0A096LPH7 203 aaPredicted RBP1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 WI2-2373I1.2A0A1W2PRP0 233 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 INS-IGF2F8WCM5 200 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 SUPT7LO94864 414 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 CDRT1O95170 752 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 EPPINO95925 133 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 CXorf1O96002 111 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 SNHG28P0DPA3 235 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 FGF6P10767 208 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 IMPA1P29218 277 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 GABRA3P34903 492 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 PPP1CCP36873 323 aaKnown RBP1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 PSMB3P49720 205 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 NCALDP61601 193 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 AP1S1P61966 158 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 C16orf72Q14CZ0 275 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 WHAMMP3Q1A5X7 153 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 ATAD3CQ5T2N8 411 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 NANOGP8Q6NSW7 305 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 RPL13AP3Q6NVV1 102 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 RFLNAQ6ZTI6 216 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 SLC16A13Q7RTY0 426 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 GDPD1Q8N9F7 314 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 ST6GALNAC3Q8NDV1 305 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 LY6G5BQ8NDX9 201 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 OR2T27Q8NH04 317 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 C11orf40Q8WZ69 217 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 PTX4Q96A99 478 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM147Q9BVK8 224 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 NANOGQ9H9S0 305 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 PSG8Q9UQ74 426 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 SYCP2Q9BX26 1530 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 EEA1Q15075 1411 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 SLIT2O94813 1529 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 IGHV3-35A0A0C4DH35 117 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 BMPR1BO00238 502 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 SERF1AO75920 110 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 IGLV2-11P01706 119 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 APOC1P02654 83 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 SERPINE1P05121 402 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 GLRXP35754 106 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 DEFA3P59666 94 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 RPL36AP83881 106 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 GRK1Q15835 563 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM183BQ1AE95 376 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 KRTAP19-4Q3LI73 84 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 NR2C2APQ86WQ0 139 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 BAP18Q8IXM2 172 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM183AQ8IXX5 376 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 GALMQ96C23 342 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 OR52A1Q9UKL2 312 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 SMG6Q86US8 1419 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 ABCA6Q8N139 1617 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 KIF15Q9NS87 1388 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 GVINP1Q7Z2Y8 2422 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 GPATCH8Q9UKJ3 1502 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 MYBPHLA2RUH7 354 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF850A8MQ14 1090 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 GYG2O15488 501 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 MFSD11O43934 449 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 HLA-DRB1P01911 266 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 PPBPP02775 128 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 CPMP14384 443 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 IL3RAP26951 378 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 POLR2IP36954 125 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 CTRLP40313 264 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 KRTAP1-1Q07627 177 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 EGFEM1PQ0D2K5 195 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 IL15RAQ13261 267 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 FCN2Q15485 313 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 FBXL19-AS1Q494R0 122 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 GUSBP11Q6P575 273 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 CLEC20AQ6ZU45 233 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 CAMK2N1Q7Z7J9 78 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 PRNTQ86SH4 94 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 DEFB125Q8N687 156 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 OR10G2Q8NGC3 310 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 OR51H1Q8NH63 302 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 LHFPL5Q8TAF8 219 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 ABHD3Q8WU67 409 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 ABHD14BQ96IU4 210 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 FAM210BQ96KR6 192 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 BMFQ96LC9 184 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 CAMK2N2Q96S95 79 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF382Q96SR6 550 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 RNASE7Q9H1E1 156 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 COPZ2Q9P299 210 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM56-RWDD3S4R434 201 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 HECTD1Q9ULT8 2610 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 BRWD3Q6RI45 1802 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 KIAA1107Q9UPP5 1409 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 DYSFO75923 2080 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 MYOM1P52179 1685 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 OTOGLQ3ZCN5 2332 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM150BA6NC51 233 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 GSTZ1O43708 216 aaPredicted RBP1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 ORC5O43913 435 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 DEDDO75618 318 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 ELK1P19419 428 aa1.75□□□□□ -2.13
CCDC88A-208ENST00000444458 S100A7P31151 101 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 130.3 ms