RNA–Protein interactions for RNA: ENST00000435201.5

LIMK1-203, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 1,883 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-203ENST00000435201 ZNF525Q8N782 197 aa13.93□□□□□ -0.18
LIMK1-203ENST00000435201 NUP37Q8NFH4 326 aa13.93□□□□□ -0.18
LIMK1-203ENST00000435201 FAM222BQ8WU58 562 aa13.93□□□□□ -0.18
LIMK1-203ENST00000435201 PSMG3Q9BT73 122 aaPredicted RBP13.93□□□□□ -0.18
LIMK1-203ENST00000435201 ABHD14AQ9BUJ0 271 aa13.93□□□□□ -0.18
LIMK1-203ENST00000435201 PARD6GQ9BYG4 376 aaPredicted RBP13.93□□□□□ -0.18
LIMK1-203ENST00000435201 SLC35B3Q9H1N7 401 aa13.93□□□□□ -0.18
LIMK1-203ENST00000435201 RBKSQ9H477 322 aa13.93□□□□□ -0.18
LIMK1-203ENST00000435201 RAB9BQ9NP90 201 aa13.93□□□□□ -0.18
LIMK1-203ENST00000435201 KIAA1456Q9P272 454 aa13.93□□□□□ -0.18
LIMK1-203ENST00000435201 GNG12Q9UBI6 72 aa13.93□□□□□ -0.18
LIMK1-203ENST00000435201 GVINP1Q7Z2Y8 2422 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 LRRC30A6NM36 301 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 F2RL2O00254 374 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 YPEL1O60688 119 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 TNFSF4P23510 183 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 GPR12P47775 334 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 BRWD1-AS2P59051 145 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 ASCL5Q7RTU5 278 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 LILRB2Q8N423 598 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 C14orf79Q96F83 325 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 YPEL2Q96QA6 119 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 OR6C3Q9NZP0 311 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 RNF7Q9UBF6 113 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 MUC6Q6W4X9 2439 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 AKAP13Q12802 2813 aa13.92□□□□□ -0.18
LIMK1-203ENST00000435201 A0A0G2JNJ9 132 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 A0A1B0GV50 99 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 DEFB108AA8MXU0 73 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 GPR37O15354 613 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 CCKARP32238 428 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 TNFAIP6P98066 277 aaPredicted RBP13.91□□□□□ -0.18
LIMK1-203ENST00000435201 MORN2Q502X0 79 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 SPANXN5Q5MJ07 72 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 TMEM108Q6UXF1 575 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 TMEM14EPQ6UXP3 125 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 H2BFWTQ7Z2G1 175 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 HAPLN4Q86UW8 402 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 ZNF561Q8N587 486 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 RBMXL1Q96E39 390 aaKnown RBP13.91□□□□□ -0.18
LIMK1-203ENST00000435201 Q9UFV3 132 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 FBXO7Q9Y3I1 522 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 CEP250Q9BV73 2442 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 LINC00473A8K010 186 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 PPIHO43447 177 aaKnown RBP13.91□□□□□ -0.18
LIMK1-203ENST00000435201 NFYBP25208 207 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 ARL16Q0P5N6 197 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 HFEQ30201 348 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 SP5Q6BEB4 398 aaPredicted RBP13.91□□□□□ -0.18
LIMK1-203ENST00000435201 SSX8Q7RTT4 187 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 ZNRF1Q8ND25 227 aa13.91□□□□□ -0.18
LIMK1-203ENST00000435201 DSPP15924 2871 aaKnown RBP13.9□□□□□ -0.18
LIMK1-203ENST00000435201 CUL9Q8IWT3 2517 aa13.9□□□□□ -0.18
LIMK1-203ENST00000435201 RBFOX3A6NFN3 312 aa13.9□□□□□ -0.18
LIMK1-203ENST00000435201 C16orf97H3BN30 126 aa13.9□□□□□ -0.18
LIMK1-203ENST00000435201 H7C2Y5 167 aa13.9□□□□□ -0.18
LIMK1-203ENST00000435201 IGHV1-46P01743 117 aa13.9□□□□□ -0.18
LIMK1-203ENST00000435201 LTC4SQ16873 150 aa13.9□□□□□ -0.18
LIMK1-203ENST00000435201 LRRC75BQ2VPJ9 315 aa13.9□□□□□ -0.18
LIMK1-203ENST00000435201 FAM122CQ6P4D5 195 aa13.9□□□□□ -0.18
LIMK1-203ENST00000435201 Q8TCH9 128 aa13.9□□□□□ -0.18
LIMK1-203ENST00000435201 CIB3Q96Q77 187 aaPredicted RBP13.9□□□□□ -0.18
LIMK1-203ENST00000435201 GCM1Q9NP62 436 aa13.9□□□□□ -0.18
LIMK1-203ENST00000435201 TRAV1-1A0A0B4J248 108 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 ITGB1BP1O14713 200 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 PTAFRP25105 342 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 DUTP33316 252 aaKnown RBP13.89□□□□□ -0.19
LIMK1-203ENST00000435201 EDDM3BP56851 147 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 SERF2P84101 59 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 SLC38A11Q08AI6 406 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 FOXC1Q12948 553 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 SMUG1Q53HV7 270 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 GFRALQ6UXV0 394 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 C22orf34Q6ZV56 151 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 SPACA3Q8IXA5 215 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 CISD2Q8N5K1 135 aaKnown RBP13.89□□□□□ -0.19
LIMK1-203ENST00000435201 Q8NA96 180 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 SDSLQ96GA7 329 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 UNKLQ9H9P5 680 aaKnown RBP13.89□□□□□ -0.19
LIMK1-203ENST00000435201 SMCO4Q9NRQ5 59 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 CALYQ9NYX4 217 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 CACNA1DQ01668 2161 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 MEX3AA1L020 520 aaKnown RBP13.89□□□□□ -0.19
LIMK1-203ENST00000435201 MARCH11A6NNE9 402 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 LOXL3P58215 753 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 CCL20P78556 96 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 FLI1Q01543 452 aaPredicted RBP13.89□□□□□ -0.19
LIMK1-203ENST00000435201 ATP6V1FQ16864 119 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 STUMQ69YW2 141 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 SFT2D1Q8WV19 159 aa13.89□□□□□ -0.19
LIMK1-203ENST00000435201 WDR61Q9GZS3 305 aaKnown RBP13.89□□□□□ -0.19
LIMK1-203ENST00000435201 USF3Q68DE3 2245 aa13.88□□□□□ -0.19
LIMK1-203ENST00000435201 FAM90A9PA6NNJ1 464 aa13.88□□□□□ -0.19
LIMK1-203ENST00000435201 PAX6P26367 422 aa13.88□□□□□ -0.19
LIMK1-203ENST00000435201 DTD1Q8TEA8 209 aa13.88□□□□□ -0.19
LIMK1-203ENST00000435201 RSG1Q9BU20 258 aa13.88□□□□□ -0.19
LIMK1-203ENST00000435201 CADP27708 2225 aa13.88□□□□□ -0.19
LIMK1-203ENST00000435201 RBFOX2O43251 390 aaKnown RBP eCLIP13.87□□□□□ -0.19
LIMK1-203ENST00000435201 SCAF4O95104 1147 aaKnown RBP13.87□□□□□ -0.19
LIMK1-203ENST00000435201 LY86O95711 162 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms