RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 TUBA4BQ9H853 241 aa13.15□□□□□ -0.3
SCARF1-203ENST00000434376 STRAPQ9Y3F4 350 aaKnown RBP13.15□□□□□ -0.3
SCARF1-203ENST00000434376 CHD3Q12873 2000 aaKnown RBP13.15□□□□□ -0.3
SCARF1-203ENST00000434376 TRAV17A0A0B4J275 112 aa13.15□□□□□ -0.31
SCARF1-203ENST00000434376 RAMP3O60896 148 aa13.15□□□□□ -0.31
SCARF1-203ENST00000434376 CLDN1O95832 211 aa13.15□□□□□ -0.31
SCARF1-203ENST00000434376 OPN1MWP04001 364 aa13.15□□□□□ -0.31
SCARF1-203ENST00000434376 OPN1MW2P0DN77 364 aa13.15□□□□□ -0.31
SCARF1-203ENST00000434376 OPN1MW3P0DN78 364 aa13.15□□□□□ -0.31
SCARF1-203ENST00000434376 DDTP30046 118 aa13.15□□□□□ -0.31
SCARF1-203ENST00000434376 FAM27E3Q08E93 113 aa13.15□□□□□ -0.31
SCARF1-203ENST00000434376 ELOBQ15370 118 aa13.15□□□□□ -0.31
SCARF1-203ENST00000434376 TMEM171Q8WVE6 324 aa13.15□□□□□ -0.31
SCARF1-203ENST00000434376 PACRGQ96M98 296 aaPredicted RBP13.15□□□□□ -0.31
SCARF1-203ENST00000434376 PSG11Q9UQ72 335 aa13.15□□□□□ -0.31
SCARF1-203ENST00000434376 HAND1O96004 215 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 SNRPCP09234 159 aaKnown RBP13.14□□□□□ -0.31
SCARF1-203ENST00000434376 WDR25Q64LD2 544 aaPredicted RBP13.14□□□□□ -0.31
SCARF1-203ENST00000434376 COMMD1Q8N668 190 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 NINJ1Q92982 152 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 GMPPAQ96IJ6 420 aaPredicted RBP13.14□□□□□ -0.31
SCARF1-203ENST00000434376 FAM210BQ96KR6 192 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 OR51I2Q9H344 312 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 J3QT63 122 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 MLNRO43193 412 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 PAX6P26367 422 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 S100GP29377 79 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 LRRC29Q8WV35 223 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 GPR146Q96CH1 333 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 TVP23CQ96ET8 276 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 WFIKKN1Q96NZ8 548 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 GLRX2Q9NS18 164 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 GNG12Q9UBI6 72 aa13.14□□□□□ -0.31
SCARF1-203ENST00000434376 SEC14L6B5MCN3 397 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 PTBP3O95758 552 aaKnown RBP13.13□□□□□ -0.31
SCARF1-203ENST00000434376 FOXC1Q12948 553 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 GABRA6Q16445 453 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 CISD2Q8N5K1 135 aaKnown RBP13.13□□□□□ -0.31
SCARF1-203ENST00000434376 TMEM252Q8N6L7 170 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 GINS3Q9BRX5 216 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 ATG101Q9BSB4 218 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 TUBD1Q9UJT1 453 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 OR2W1Q9Y3N9 320 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 MALRD1Q5VYJ5 2156 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 TM4SF5O14894 197 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 Q3ZCU0 254 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 TGIF2LYQ8IUE0 185 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 ASCL3Q9NQ33 180 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 CEACAM18A8MTB9 384 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 SH2D1BO14796 132 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 RRP8O43159 456 aaKnown RBP13.13□□□□□ -0.31
SCARF1-203ENST00000434376 CD55P08174 381 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 LILRB2Q8N423 598 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 LFNGQ8NES3 379 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 LOXL4Q96JB6 756 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 SCRT1Q9BWW7 348 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 KCNIP1Q9NZI2 227 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 PROCRQ9UNN8 238 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 MRPS18CQ9Y3D5 142 aaKnown RBP13.13□□□□□ -0.31
SCARF1-203ENST00000434376 MPC1Q9Y5U8 109 aa13.13□□□□□ -0.31
SCARF1-203ENST00000434376 FAM208BQ5VWN6 2430 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 NAPSAO96009 420 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 F2RP25116 425 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 CASP6P55212 293 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 HLA-DRB3P79483 266 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 PCSK4Q6UW60 755 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 ZADH2Q8N4Q0 377 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 SARAFQ96BY9 339 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 PRDM13Q9H4Q3 707 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 DCAF16Q9NXF7 216 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 COL8A2P25067 703 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 ZNF266Q14584 549 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 MOGAT3Q86VF5 341 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 TAAR3PQ9P1P4 343 aa13.12□□□□□ -0.31
SCARF1-203ENST00000434376 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.12□□□□□ -0.313e-6■□□□□ 10.1
SCARF1-203ENST00000434376 OR5B21A6NL26 309 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 ADIRFQ15847 76 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 DUX4L9Q6RFH8 374 aaPredicted RBP13.11□□□□□ -0.31
SCARF1-203ENST00000434376 ASCL4Q6XD76 172 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 Q6ZR03 302 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 FGFRL1Q8N441 504 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 C18orf12Q96KH6 178 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 CABLES2Q9BTV7 478 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 PLK3Q9H4B4 646 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 CLN8Q9UBY8 286 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 WASF3Q9UPY6 502 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 TMED3Q9Y3Q3 217 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 HIST1H1BP16401 226 aaKnown RBP13.11□□□□□ -0.31
SCARF1-203ENST00000434376 COL10A1Q03692 680 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 C22orf34Q6ZV56 151 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 WFDC8Q8IUA0 241 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 MISP3Q96FF7 219 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 ZDHHC11Q9H8X9 412 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 K7N7A8 449 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 SRP19P09132 144 aaKnown RBP13.11□□□□□ -0.31
SCARF1-203ENST00000434376 CD200P41217 278 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 TGIF2LXQ8IUE1 241 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 SNRNP40Q96DI7 357 aaKnown RBP13.11□□□□□ -0.31
SCARF1-203ENST00000434376 SDSLQ96GA7 329 aa13.11□□□□□ -0.31
SCARF1-203ENST00000434376 CEBPZOSA8MTT3 80 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms