RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 VAX2Q9UIW0 290 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 ODAMA1E959 279 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 TMEM210A6NLX4 147 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 C17orf98A8MV24 154 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 HIST1H2BKO60814 126 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 HIST1H2BJP06899 126 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 HIST1H2BOP23527 126 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 HIST1H2BBP33778 126 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 HIST1H2BDP58876 126 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 BRWD1-AS2P59051 145 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 HIST1H2BCP62807 126 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 HIST2H2BEQ16778 126 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.9□□□□□ -0.82
CD44-209ENST00000433892 PRAMEF6Q5VXH4 476 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 SPNS3Q6ZMD2 512 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 MRGPRGQ86SM5 289 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 C11orf53Q8IXP5 236 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 HIST1H2BHQ93079 126 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 LHX4Q969G2 390 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 PINX1Q96BK5 328 aaKnown RBP9.9□□□□□ -0.82
CD44-209ENST00000433892 HIST1H2BNQ99877 126 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 HIST1H2BMQ99879 126 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 OR51M1Q9H341 326 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 SLC39A9Q9NUM3 307 aa9.9□□□□□ -0.82
CD44-209ENST00000433892 LRRC30A6NM36 301 aa9.9□□□□□ -0.83
CD44-209ENST00000433892 ZNF737O75373 536 aa9.9□□□□□ -0.83
CD44-209ENST00000433892 CDX1P47902 265 aaPredicted RBP9.9□□□□□ -0.83
CD44-209ENST00000433892 TNFSF10P50591 281 aa9.9□□□□□ -0.83
CD44-209ENST00000433892 SOX8P57073 446 aa9.9□□□□□ -0.83
CD44-209ENST00000433892 PNRC1Q12796 327 aaPredicted RBP9.9□□□□□ -0.83
CD44-209ENST00000433892 Q6ZT83 130 aa9.9□□□□□ -0.83
CD44-209ENST00000433892 FAM214BQ7L5A3 538 aa9.9□□□□□ -0.83
CD44-209ENST00000433892 NINJ1Q92982 152 aa9.9□□□□□ -0.83
CD44-209ENST00000433892 ZDHHC16Q969W1 377 aa9.9□□□□□ -0.83
CD44-209ENST00000433892 COQ2Q96H96 371 aa9.9□□□□□ -0.83
CD44-209ENST00000433892 SSX3Q99909 188 aa9.9□□□□□ -0.83
CD44-209ENST00000433892 GGACTQ9BVM4 153 aa9.9□□□□□ -0.83
CD44-209ENST00000433892 SDF2L1Q9HCN8 221 aa9.9□□□□□ -0.83
CD44-209ENST00000433892 PCNX2A6NKB5 2137 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 IGHV3-43A0A0B4J1X8 118 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 OOEPA6NGQ2 149 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 CYB5R3P00387 301 aaPredicted RBP9.89□□□□□ -0.83
CD44-209ENST00000433892 P0C879 139 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 IGHV3-43DP0DP04 118 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 SSTR5P35346 364 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 EIF4EBP1Q13541 118 aaPredicted RBP9.89□□□□□ -0.83
CD44-209ENST00000433892 MSMO1Q15800 293 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 ACSF3Q4G176 576 aaPredicted RBP9.89□□□□□ -0.83
CD44-209ENST00000433892 SPINK9Q5DT21 86 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 SLC35E4Q6ICL7 350 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 ACSM6Q6P461 480 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 INO80CQ6PI98 192 aaPredicted RBP9.89□□□□□ -0.83
CD44-209ENST00000433892 RFESDQ8TAC1 157 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 FAM210BQ96KR6 192 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 P2RX4Q99571 388 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 PARD6GQ9BYG4 376 aaPredicted RBP9.89□□□□□ -0.83
CD44-209ENST00000433892 MSL2Q9HCI7 577 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 CLCF1Q9UBD9 225 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 METRNQ9UJH8 293 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 OR5H1A6NKK0 313 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 DEFB108AA8MXU0 73 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 C1QTNF9BB2RNN3 333 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 CLDN34H7C241 214 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 ZG16O60844 167 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 RBMXL2O75526 392 aaKnown RBP9.89□□□□□ -0.83
CD44-209ENST00000433892 PTBP3O95758 552 aaKnown RBP9.89□□□□□ -0.83
CD44-209ENST00000433892 FABP6P51161 128 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 CD81P60033 236 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 ACP7Q6ZNF0 438 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 ZBTB34Q8NCN2 500 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 SLC25A22Q9H936 323 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.89□□□□□ -0.83
CD44-209ENST00000433892 DMXL1Q9Y485 3027 aa9.89□□□□□ -0.83
CD44-209ENST00000433892 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.88□□□□□ -0.83
CD44-209ENST00000433892 IFNA1P01562 189 aa9.88□□□□□ -0.83
CD44-209ENST00000433892 S100PP25815 95 aa9.88□□□□□ -0.83
CD44-209ENST00000433892 CATR1Q13166 79 aa9.88□□□□□ -0.83
CD44-209ENST00000433892 PDZD11Q5EBL8 140 aa9.88□□□□□ -0.83
CD44-209ENST00000433892 GFI1BQ5VTD9 330 aa9.88□□□□□ -0.83
CD44-209ENST00000433892 WDR25Q64LD2 544 aaPredicted RBP9.88□□□□□ -0.83
CD44-209ENST00000433892 VWA1Q6PCB0 445 aa9.88□□□□□ -0.83
CD44-209ENST00000433892 WDR82Q6UXN9 313 aa9.88□□□□□ -0.83
CD44-209ENST00000433892 C1orf87Q8N0U7 546 aa9.88□□□□□ -0.83
CD44-209ENST00000433892 DTD1Q8TEA8 209 aa9.88□□□□□ -0.83
CD44-209ENST00000433892 EDARADDQ8WWZ3 215 aa9.88□□□□□ -0.83
CD44-209ENST00000433892 TMEM242Q9NWH2 141 aa9.88□□□□□ -0.83
CD44-209ENST00000433892 SMG1Q96Q15 3661 aaKnown RBP9.88□□□□□ -0.83
CD44-209ENST00000433892 TRAV20A0A0B4J274 112 aa9.87□□□□□ -0.83
CD44-209ENST00000433892 LINC00473A8K010 186 aa9.87□□□□□ -0.83
CD44-209ENST00000433892 M0R296 226 aa9.87□□□□□ -0.83
CD44-209ENST00000433892 TIMM8AO60220 97 aaPredicted RBP9.87□□□□□ -0.83
CD44-209ENST00000433892 HOXC12P31275 282 aa9.87□□□□□ -0.83
CD44-209ENST00000433892 CCL11P51671 97 aa9.87□□□□□ -0.83
CD44-209ENST00000433892 MEF2BQ02080 365 aaPredicted RBP9.87□□□□□ -0.83
CD44-209ENST00000433892 COL10A1Q03692 680 aa9.87□□□□□ -0.83
CD44-209ENST00000433892 C4orf17Q53FE4 359 aa9.87□□□□□ -0.83
CD44-209ENST00000433892 OR13A1Q8NGR1 328 aa9.87□□□□□ -0.83
CD44-209ENST00000433892 ABHD5Q8WTS1 349 aa9.87□□□□□ -0.83
CD44-209ENST00000433892 FRZBQ92765 325 aa9.87□□□□□ -0.83
CD44-209ENST00000433892 SMIM7Q9BQ49 75 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms