RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 RHEBQ15382 184 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 GSG1Q2KHT4 349 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 SMIM21Q3B7S5 101 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 SCGB2B2Q4G0G5 96 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 COL5A1-AS1Q5SY13 56 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 LCE1AQ5T7P2 110 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 ZNF774Q6NX45 483 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 TBPL2Q6SJ96 375 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 ALKAL2Q6UX46 152 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 C12orf54Q6X4T0 127 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 ZNF620Q6ZNG0 422 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 DNM1P46Q6ZS02 220 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 SLC35D2Q76EJ3 337 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 COX15Q7KZN9 410 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 PID1Q7Z2X4 250 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 FAM220AQ7Z4H9 259 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 GLT6D1Q7Z4J2 308 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 SLC30A8Q8IWU4 369 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 HIST3H2BBQ8N257 126 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 GTPBP8Q8N3Z3 284 aaPredicted RBP3.13□□□□□ -1.91
HMGB3-203ENST00000430118 CCDC71LQ8N9Z2 235 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 GPR26Q8NDV2 337 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 OR51D1Q8NGF3 324 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 OR6T1Q8NGN1 323 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 OR10R2Q8NGX6 335 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 SGMS2Q8NHU3 365 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 CD200R1Q8TD46 325 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 C11orf40Q8WZ69 217 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 PSMF1Q92530 271 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 HAVCR1Q96D42 359 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 GALNT14Q96FL9 552 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 DIRAS2Q96HU8 199 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 OR2V2Q96R30 315 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 NRIP2Q9BQI9 281 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 SNRNP25Q9BV90 132 aaKnown RBP3.13□□□□□ -1.91
HMGB3-203ENST00000430118 SUCNR1Q9BXA5 334 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 GABARAPL3Q9BY60 117 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 SRXN1Q9BYN0 137 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 OR8D2Q9GZM6 311 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 OR51E2Q9H255 320 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 PLEKHF2Q9H8W4 249 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 GNB4Q9HAV0 340 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 FAM60AQ9NP50 221 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 MMP26Q9NRE1 261 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 UBQLN4Q9NRR5 601 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 RBM22Q9NW64 420 aaKnown RBP eCLIP3.13□□□□□ -1.91
HMGB3-203ENST00000430118 C1orf109Q9NX04 203 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 MDFICQ9P1T7 246 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 ASF1AQ9Y294 204 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 RPL36Q9Y3U8 105 aaKnown RBP3.13□□□□□ -1.91
HMGB3-203ENST00000430118 CSDC2Q9Y534 153 aaKnown RBP3.13□□□□□ -1.91
HMGB3-203ENST00000430118 ACANP16112 2415 aa3.13□□□□□ -1.91
HMGB3-203ENST00000430118 CHD3Q12873 2000 aaKnown RBP3.12□□□□□ -1.91
HMGB3-203ENST00000430118 PCNX3Q9H6A9 2034 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 CPAMD8Q8IZJ3 1885 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 hCG_1818297A0A087WSY0 165 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 A0A0J9YWU9 116 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 NAP1L6A6NFF2 107 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 ZNF726A6NNF4 738 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 ZNF705EA8MWA4 302 aaPredicted RBP3.12□□□□□ -1.91
HMGB3-203ENST00000430118 EEF1E1-BLOC1S5C9J1V9 151 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 K7ERU9 68 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 SCAMP2O15127 329 aaKnown RBP3.12□□□□□ -1.91
HMGB3-203ENST00000430118 EEF1E1O43324 174 aaKnown RBP3.12□□□□□ -1.91
HMGB3-203ENST00000430118 HCRTR1O43613 425 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 TCF21O43680 179 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 CD5LO43866 347 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 STK16O75716 305 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 VAMP5O95183 116 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 SIX6O95475 246 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 CYB5R3P00387 301 aaPredicted RBP3.12□□□□□ -1.91
HMGB3-203ENST00000430118 HPRT1P00492 218 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 IGHV3-13P01766 116 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 TCRBP04435 133 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 IL5P05113 134 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 BCHEP06276 602 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 CCL2P13500 99 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 ZNF35P13682 527 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 SRMP19623 302 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 CXCL3P19876 107 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 KITLGP21583 273 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 PSMA1P25786 263 aaKnown RBP3.12□□□□□ -1.91
HMGB3-203ENST00000430118 BRS3P32247 399 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 PRLHRP49683 370 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 LIM2P55344 173 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 CTBP2P56545 445 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 CLDN12P56749 244 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 UBE2G2P60604 165 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 RANP62826 216 aaKnown RBP3.12□□□□□ -1.91
HMGB3-203ENST00000430118 HBA1P69905 142 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 FABP5Q01469 135 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 SLC9A3R2Q15599 337 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 OR4D1Q15615 310 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 PRR4Q16378 134 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 FBXL19-AS1Q494R0 122 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 MORN2Q502X0 79 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 C1orf194Q5T5A4 169 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 BCL2L15Q5TBC7 163 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 SPINK14Q6IE38 97 aa3.12□□□□□ -1.91
HMGB3-203ENST00000430118 DRAM2Q6UX65 266 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms