RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 MC5RP33032 325 aa11.2□□□□□ -0.62
SDC1-204ENST00000429035 CRIP2P52943 208 aaPredicted RBP11.2□□□□□ -0.62
SDC1-204ENST00000429035 RPS16P62249 146 aaKnown RBP11.2□□□□□ -0.62
SDC1-204ENST00000429035 MED22Q15528 200 aa11.2□□□□□ -0.62
SDC1-204ENST00000429035 C19orf54Q5BKX5 351 aa11.2□□□□□ -0.62
SDC1-204ENST00000429035 MS4A15Q8N5U1 240 aa11.2□□□□□ -0.62
SDC1-204ENST00000429035 LFNGQ8NES3 379 aa11.2□□□□□ -0.62
SDC1-204ENST00000429035 FLYWCH2Q96CP2 140 aaKnown RBP11.2□□□□□ -0.62
SDC1-204ENST00000429035 URM1Q9BTM9 101 aaKnown RBP11.2□□□□□ -0.62
SDC1-204ENST00000429035 TMEM14DPA8MWL7 114 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 PTGES3LE9PB15 166 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 SLC22A1O15245 554 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 SOCS1O15524 211 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 RBBP9O75884 186 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 BPNT1O95861 308 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 NAPSAO96009 420 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 APOA2P02652 100 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 TRGV3P03979 118 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 HSPB1P04792 205 aaKnown RBP11.19□□□□□ -0.62
SDC1-204ENST00000429035 CDK1P06493 297 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 SNRPBP14678 240 aaKnown RBP11.19□□□□□ -0.62
SDC1-204ENST00000429035 ZBTB25P24278 435 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 CEACAM6P40199 344 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 C1orf100Q5SVJ3 147 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 ACSM6Q6P461 480 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 ZNF880Q6PDB4 577 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 OR6M1Q8NGM8 313 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 PHYHIPQ92561 330 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 UFD1Q92890 307 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 TMEM203Q969S6 136 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 C11orf54Q9H0W9 315 aaPredicted RBP11.19□□□□□ -0.62
SDC1-204ENST00000429035 VCXQ9H320 206 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 TPSG1Q9NRR2 321 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 PLCXD1Q9NUJ7 323 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 ZNF221Q9UK13 617 aa11.19□□□□□ -0.62
SDC1-204ENST00000429035 SLC25A17O43808 307 aa11.18□□□□□ -0.62
SDC1-204ENST00000429035 SCTP09683 121 aa11.18□□□□□ -0.62
SDC1-204ENST00000429035 EGR2P11161 476 aaPredicted RBP11.18□□□□□ -0.62
SDC1-204ENST00000429035 SRMP19623 302 aa11.18□□□□□ -0.62
SDC1-204ENST00000429035 DEFA5Q01523 94 aa11.18□□□□□ -0.62
SDC1-204ENST00000429035 PSG5Q15238 335 aa11.18□□□□□ -0.62
SDC1-204ENST00000429035 LIPKQ5VXJ0 399 aa11.18□□□□□ -0.62
SDC1-204ENST00000429035 CD200R1LQ6Q8B3 271 aa11.18□□□□□ -0.62
SDC1-204ENST00000429035 OR5AN1Q8NGI8 311 aa11.18□□□□□ -0.62
SDC1-204ENST00000429035 TSNAXQ99598 290 aaKnown RBP11.18□□□□□ -0.62
SDC1-204ENST00000429035 CMSS1Q9BQ75 279 aaKnown RBP11.18□□□□□ -0.62
SDC1-204ENST00000429035 ELOVL1Q9BW60 279 aa11.18□□□□□ -0.62
SDC1-204ENST00000429035 LPAR5Q9H1C0 372 aa11.18□□□□□ -0.62
SDC1-204ENST00000429035 RIMS4Q9H426 269 aaPredicted RBP11.18□□□□□ -0.62
SDC1-204ENST00000429035 C12orf4Q9NQ89 552 aa11.18□□□□□ -0.62
SDC1-204ENST00000429035 FKBP14Q9NWM8 211 aa11.18□□□□□ -0.62
SDC1-204ENST00000429035 NUBP2Q9Y5Y2 271 aa11.18□□□□□ -0.62
SDC1-204ENST00000429035 C13orf42A0A1B0GVH6 325 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 ANKRD34BA5PLL1 514 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 M0R1X1 148 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 CNIH1O95406 144 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 IGKV1-16P04430 117 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 TFAP2AP05549 437 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 HSMCR30P0CW71 290 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 ARSBP15848 533 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 VEGFCP49767 419 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 LINC00205P59089 165 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 FXYD3Q14802 87 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 SPHARQ15513 63 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 RAB11BQ15907 218 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 CASC10Q5T4H9 136 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 ANKRD13BQ86YJ7 626 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 FBLIM1Q8WUP2 373 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 SLA2Q9H6Q3 261 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 SLC35D1Q9NTN3 355 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 MGAT4AQ9UM21 535 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 STUB1Q9UNE7 303 aa11.17□□□□□ -0.62
SDC1-204ENST00000429035 AK6Q9Y3D8 172 aaKnown RBP11.17□□□□□ -0.62
SDC1-204ENST00000429035 ITGB1BP1O14713 200 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 SPDEFO95238 335 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 UCHL1P09936 223 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 CLDN12P56749 244 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 RPS25P62851 125 aaKnown RBP11.16□□□□□ -0.62
SDC1-204ENST00000429035 MRPS15P82914 257 aaKnown RBP11.16□□□□□ -0.62
SDC1-204ENST00000429035 QRFPP83859 136 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 AKIRIN2Q53H80 203 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 OGFRL1Q5TC84 451 aaPredicted RBP11.16□□□□□ -0.62
SDC1-204ENST00000429035 ZFAND6Q6FIF0 208 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 PDPNQ86YL7 162 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 ZNF383Q8NA42 475 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 POC5Q8NA72 575 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 OR5T1Q8NG75 326 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 ARHGAP5-AS1Q96IT6 56 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 Q9N2K0 584 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 SCN3BQ9NY72 215 aa11.16□□□□□ -0.62
SDC1-204ENST00000429035 DNAH7Q8WXX0 4024 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 TRBV6-6A0A0A6YYG2 114 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 SLC17A2O00624 439 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 BET1O15155 118 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 IGHV4-30-4P0DP06 118 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 LYL1P12980 280 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 CBX3Q13185 183 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 ZNF562Q6V9R5 426 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 SGPP2Q8IWX5 399 aa11.15□□□□□ -0.62
SDC1-204ENST00000429035 RHOVQ96L33 236 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms