RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 LRRTM1Q86UE6 522 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 BATF2Q8N1L9 274 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 OSR2Q8N2R0 312 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 JAGN1Q8N5M9 183 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 C11orf42Q8N5U0 333 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 Q8N7P7 452 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 OR4S1Q8NGB4 309 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 TNFRSF14Q92956 283 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 LHX4Q969G2 390 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 TMEM203Q969S6 136 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 TMED9Q9BVK6 235 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 BARHL1Q9BZE3 327 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 METTL8Q9H825 291 aaKnown RBP1.99□□□□□ -2.09
VPS13A-208ENST00000423463 SPACA1Q9HBV2 294 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 C19orf12Q9NSK7 152 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 TAS2R3Q9NYW6 316 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 ONECUT1Q9UBC0 465 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 DAPK2Q9UIK4 370 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 ST3GAL6Q9Y274 331 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 LINC00312Q9Y6C7 94 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 IGHV3OR16-10A0A075B7F0 116 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 A0A087WXM4 84 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 TRGV10A0A0A0MS01 117 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 TRAV24A0A0B4J272 114 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 TRAV40A0A0B4J280 105 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 C5orf52A6NGY3 159 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 CLDN34H7C241 214 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 SIRPB1O00241 398 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 SLC33A1O00400 549 aaPredicted RBP1.99□□□□□ -2.09
VPS13A-208ENST00000423463 CA11O75493 328 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 VENTXO95231 258 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 TNFAIP8O95379 198 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 IGHV4-38-2P0DP08 117 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 CALCBP10092 127 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 GZMHP20718 246 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 HTR2CP28335 458 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 FGF9P31371 208 aaPredicted RBP1.99□□□□□ -2.09
VPS13A-208ENST00000423463 UBE2E1P51965 193 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 SNU13P55769 128 aaKnown RBP1.99□□□□□ -2.09
VPS13A-208ENST00000423463 DLX6P56179 175 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 RBM11P57052 281 aaKnown RBP1.99□□□□□ -2.09
VPS13A-208ENST00000423463 FABP5Q01469 135 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 PAX5Q02548 391 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 ZNF415Q09FC8 603 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 EDDM3AQ14507 147 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 INSL4Q14641 139 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 SSX1Q16384 188 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 SLC22A6Q4U2R8 563 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 PAN3Q58A45 887 aaKnown RBP1.99□□□□□ -2.09
VPS13A-208ENST00000423463 FAM27D1Q5T7N8 215 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 SYT6Q5T7P8 510 aaPredicted RBP1.99□□□□□ -2.09
VPS13A-208ENST00000423463 OR52W1Q6IF63 320 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 TPRA1Q86W33 373 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 TMEM86BQ8N661 226 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 SIGLECL1Q8N7X8 197 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 ZNF565Q8N9K5 539 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 OR4M1Q8NGD0 313 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 OR6M1Q8NGM8 313 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 OR10K1Q8NGX5 313 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 KCNG3Q8TAE7 436 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 C1orf147Q96MC9 270 aaPredicted RBP1.99□□□□□ -2.09
VPS13A-208ENST00000423463 SLC6A7Q99884 636 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 FAM192AQ9GZU8 254 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 CST11Q9H112 138 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 GAL3ST2Q9H3Q3 398 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 VCX3AQ9NNX9 186 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 NDUFB11Q9NX14 153 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 SSR3Q9UNL2 185 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 V9GY05 133 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 KIAA1109Q2LD37 5005 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 TLN2Q9Y4G6 2542 aa1.99□□□□□ -2.09
VPS13A-208ENST00000423463 C2CD3Q4AC94 2353 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 NAV3Q8IVL0 2385 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 ODAMA1E959 279 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 ZNF729A6NN14 1252 aaPredicted RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 RNF212BA8MTL3 300 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 MCRIP1C9JLW8 97 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 RNASEK-C17orf49H0YIS7 233 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 SLC17A2O00624 439 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 NPFFO15130 113 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 SLC22A1O15245 554 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 OR7C1O76099 320 aaPredicted RBP1.98□□□□□ -2.09
VPS13A-208ENST00000423463 CGB3P0DN86 165 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 CGB7P0DN87 165 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 IGHV1-8P0DP01 117 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 MGMTP16455 207 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 CCL3L1P16619 93 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 SERPINA2P20848 420 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 FUT3P21217 361 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 MYL9P24844 172 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 PSMB9P28065 219 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 AESQ08117 197 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 BAMBIQ13145 260 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 FAM189A2Q15884 450 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 RAB11BQ15907 218 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 TAF9Q16594 264 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 AANATQ16613 207 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 DEFB112Q30KQ8 113 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 PIGYQ3MUY2 71 aa1.98□□□□□ -2.09
VPS13A-208ENST00000423463 ATAD3CQ5T2N8 411 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms