RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 TMEM80Q96HE8 168 aa6.18□□□□□ -1.42
VIM-202ENST00000421459 AGMATQ9BSE5 352 aa6.18□□□□□ -1.42
VIM-202ENST00000421459 TMED9Q9BVK6 235 aa6.18□□□□□ -1.42
VIM-202ENST00000421459 ELOVL1Q9BW60 279 aa6.18□□□□□ -1.42
VIM-202ENST00000421459 C11orf54Q9H0W9 315 aaPredicted RBP6.18□□□□□ -1.42
VIM-202ENST00000421459 VCXQ9H320 206 aa6.18□□□□□ -1.42
VIM-202ENST00000421459 SLC23A1Q9UHI7 598 aa6.18□□□□□ -1.42
VIM-202ENST00000421459 STUB1Q9UNE7 303 aa6.18□□□□□ -1.42
VIM-202ENST00000421459 DIMT1Q9UNQ2 313 aaKnown RBP6.18□□□□□ -1.42
VIM-202ENST00000421459 EXOSC1Q9Y3B2 195 aaKnown RBP6.18□□□□□ -1.42
VIM-202ENST00000421459 SELENOKQ9Y6D0 94 aa6.18□□□□□ -1.42
VIM-202ENST00000421459 FAM90A7PA6NKC0 464 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 FAM90A23PA8MXZ1 464 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 A8MZ25 164 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 RAB29O14966 203 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 RGS11O94810 467 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 GLAP06280 429 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 APELAP0DMC3 54 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 MYL12AP19105 171 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 CELP19835 753 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 CEACAM6P40199 344 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 HSPA13P48723 471 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 VEGFCP49767 419 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 AQP4P55087 323 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 SYNJ2BPP57105 145 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 RPS16P62249 146 aaKnown RBP6.17□□□□□ -1.42
VIM-202ENST00000421459 DYRK1AQ13627 763 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 KLF5Q13887 457 aaPredicted RBP6.17□□□□□ -1.42
VIM-202ENST00000421459 FXYD3Q14802 87 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 LAIR2Q6ISS4 152 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 ZNF562Q6V9R5 426 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 SGPP2Q8IWX5 399 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 SVOPQ8N4V2 548 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 ZNF383Q8NA42 475 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 OR5AN1Q8NGI8 311 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 NEDD4LQ96PU5 975 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 KRTAP17-1Q9BYP8 105 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 CHMP1AQ9HD42 196 aaPredicted RBP6.17□□□□□ -1.42
VIM-202ENST00000421459 STEAP1Q9UHE8 339 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 WASHC3Q9Y3C0 194 aa6.17□□□□□ -1.42
VIM-202ENST00000421459 IGKV1-6A0A0C4DH72 117 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 C13orf42A0A1B0GVH6 325 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 OR5H14A6NHG9 310 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 SOCS1O15524 211 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 SLC25A17O43808 307 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 NAPSAO96009 420 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 CSN3P07498 182 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 SCTP09683 121 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 CD3GP09693 182 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 CPEP16870 476 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 EDN2P20800 178 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 RPS27AP62979 156 aaKnown RBP6.16□□□□□ -1.42
VIM-202ENST00000421459 ST3GAL4Q11206 333 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 UNC119Q13432 240 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 LY6G6FQ5SQ64 297 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 PYHIN1Q6K0P9 492 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 ZNF880Q6PDB4 577 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 ZNF554Q86TJ5 538 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 LRRTM1Q86UE6 522 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 CDH26Q8IXH8 852 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 TCTEX1D1Q8N7M0 179 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 POC5Q8NA72 575 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 ZNF555Q8NEP9 628 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 OR9G4Q8NGQ1 327 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 CYGBQ8WWM9 190 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 SPATA25Q9BR10 227 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 THAP7Q9BT49 309 aaPredicted RBP6.16□□□□□ -1.42
VIM-202ENST00000421459 TUBA4BQ9H853 241 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 PLEKHA3Q9HB20 300 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 RANGRFQ9HD47 186 aaPredicted RBP6.16□□□□□ -1.42
VIM-202ENST00000421459 CHCHD3Q9NX63 227 aaKnown RBP6.16□□□□□ -1.42
VIM-202ENST00000421459 SMPD3Q9NY59 655 aaPredicted RBP6.16□□□□□ -1.42
VIM-202ENST00000421459 PIPOXQ9P0Z9 390 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 ABRACLQ9P1F3 81 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 AK3Q9UIJ7 227 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 RAB26Q9ULW5 256 aa6.16□□□□□ -1.42
VIM-202ENST00000421459 DENRO43583 198 aaKnown RBP6.15□□□□□ -1.42
VIM-202ENST00000421459 IGLV2-23P01705 113 aa6.15□□□□□ -1.42
VIM-202ENST00000421459 PRH1P02810 166 aa6.15□□□□□ -1.42
VIM-202ENST00000421459 TFAP2AP05549 437 aa6.15□□□□□ -1.42
VIM-202ENST00000421459 CD40LGP29965 261 aa6.15□□□□□ -1.42
VIM-202ENST00000421459 MC5RP33032 325 aa6.15□□□□□ -1.42
VIM-202ENST00000421459 QRFPP83859 136 aa6.15□□□□□ -1.42
VIM-202ENST00000421459 MRGPRG-AS1Q2M3A8 158 aa6.15□□□□□ -1.42
VIM-202ENST00000421459 ACSM3Q53FZ2 586 aa6.15□□□□□ -1.42
VIM-202ENST00000421459 FAM71F2Q6NXP2 309 aa6.15□□□□□ -1.42
VIM-202ENST00000421459 UQCC2Q9BRT2 126 aa6.15□□□□□ -1.42
VIM-202ENST00000421459 WFDC10AQ9H1F0 79 aa6.15□□□□□ -1.42
VIM-202ENST00000421459 HIPK2Q9H2X6 1198 aa6.15□□□□□ -1.42
VIM-202ENST00000421459 SLA2Q9H6Q3 261 aa6.15□□□□□ -1.42
VIM-202ENST00000421459 KMT2AQ03164 3969 aa6.14□□□□□ -1.43
VIM-202ENST00000421459 RBMY1BA6NDE4 496 aaKnown RBP6.14□□□□□ -1.43
VIM-202ENST00000421459 RBMY1EA6NEQ0 496 aaKnown RBP6.14□□□□□ -1.43
VIM-202ENST00000421459 SRRM4A7MD48 611 aaKnown RBP6.14□□□□□ -1.43
VIM-202ENST00000421459 TMEM14DPA8MWL7 114 aa6.14□□□□□ -1.43
VIM-202ENST00000421459 M0R1X1 148 aa6.14□□□□□ -1.43
VIM-202ENST00000421459 SLC22A1O15245 554 aa6.14□□□□□ -1.43
VIM-202ENST00000421459 RBBP9O75884 186 aa6.14□□□□□ -1.43
VIM-202ENST00000421459 CNIH1O95406 144 aa6.14□□□□□ -1.43
VIM-202ENST00000421459 BRI3O95415 125 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms