RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 ARL6Q9H0F7 186 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 SYT4Q9H2B2 425 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 SMDT1Q9H4I9 107 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 METTL17Q9H7H0 456 aaPredicted RBP2.87□□□□□ -1.95
VPS54-204ENST00000416400 METTL8Q9H825 291 aaKnown RBP2.87□□□□□ -1.95
VPS54-204ENST00000416400 NRBP2Q9NSY0 501 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 RASL12Q9NYN1 266 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 COMMD9Q9P000 198 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 ZNF257Q9Y2Q1 563 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 YTHDF2Q9Y5A9 579 aaKnown RBP2.87□□□□□ -1.95
VPS54-204ENST00000416400 OR51B2Q9Y5P1 312 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 PEAK1Q9H792 1746 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 DUOX1Q9NRD9 1551 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 COL1A2P08123 1366 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 PSME4Q14997 1843 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 ZNF142P52746 1687 aaPredicted RBP2.86□□□□□ -1.95
VPS54-204ENST00000416400 KIF1AQ12756 1690 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 UBR1Q8IWV7 1749 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 DDX60Q8IY21 1712 aaKnown RBP2.86□□□□□ -1.95
VPS54-204ENST00000416400 NALCNQ8IZF0 1738 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 GGT3PA6NGU5 568 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 ZNF705GA8MUZ8 300 aaPredicted RBP2.86□□□□□ -1.95
VPS54-204ENST00000416400 NDUFC2-KCTD14E9PQ53 114 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 F5H5P2 479 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 M0QYV0 167 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 M0R143 59 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 TAAR5O14804 337 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 RTL8CO15255 209 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 SOCS1O15524 211 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 OR2T1O43869 369 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 NDUFS6O75380 124 aaKnown RBP2.86□□□□□ -1.95
VPS54-204ENST00000416400 SOD1P00441 154 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 CFDP00746 253 aaPredicted RBP2.86□□□□□ -1.95
VPS54-204ENST00000416400 ADRA2AP08913 450 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 CISD3P0C7P0 127 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 IGFBP3P17936 291 aaPredicted RBP2.86□□□□□ -1.95
VPS54-204ENST00000416400 GPX2P18283 190 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 HTR2CP28335 458 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 ARL2P36404 184 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 OMPP47874 163 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 IDH3GP51553 393 aaPredicted RBP2.86□□□□□ -1.95
VPS54-204ENST00000416400 UBE2E1P51965 193 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 CEBPGP53567 150 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 TAS2R43P59537 309 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 SELENOWP63302 87 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 HOXC5Q00444 222 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 HTR4Q13639 388 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 OR1Q1Q15612 314 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 SSX1Q16384 188 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 TMEM244Q5VVB8 128 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 NCBP2-AS2Q69YL0 99 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 HBMQ6B0K9 141 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 CLEC6AQ6EIG7 209 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 FAM71E1Q6IPT2 247 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 DRAM2Q6UX65 266 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 ALKAL1Q6UXT8 129 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 OR13D1Q8NGV5 346 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 OR4K15Q8NH41 348 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 UBALD1Q8TB05 177 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 RXFP4Q8TDU9 374 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 ING5Q8WYH8 240 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 RERGQ96A58 199 aaPredicted RBP2.86□□□□□ -1.95
VPS54-204ENST00000416400 STARD4Q96DR4 205 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 RBMXL1Q96E39 390 aaKnown RBP2.86□□□□□ -1.95
VPS54-204ENST00000416400 C14orf144Q96I85 54 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 UBE2E2Q96LR5 201 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 TRIB3Q96RU7 358 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 HBEGFQ99075 208 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 TBL1YQ9BQ87 522 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 UTP23Q9BRU9 249 aaKnown RBP2.86□□□□□ -1.95
VPS54-204ENST00000416400 DERL2Q9GZP9 239 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 MFSD1Q9H3U5 465 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 WFDC1Q9HC57 220 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 TREM1Q9NP99 234 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 MTCH2Q9Y6C9 303 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 V9GYS6 101 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 RIMBP3CA6NJZ7 1639 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 RIMBP3BA6NNM3 1639 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 LRP5O75197 1615 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 RIMBP3Q9UFD9 1639 aa2.86□□□□□ -1.95
VPS54-204ENST00000416400 MYH11P35749 1972 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 IGKV2D-24A0A075B6R9 120 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 A0A0B4J2E0 115 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 A0A1B0GV90 55 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 COLCA2A8K830 154 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 K7ERQ8 282 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 M0QZ92 97 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 MFNGO00587 321 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 UBFD1O14562 309 aaKnown RBP2.85□□□□□ -1.95
VPS54-204ENST00000416400 RFXANKO14593 260 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 EEF1E1O43324 174 aaKnown RBP2.85□□□□□ -1.95
VPS54-204ENST00000416400 STK16O75716 305 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 ARL6IP5O75915 188 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 AHSA1O95433 338 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 ZNF688P0C7X2 276 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 COX5BP10606 129 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 SLC25A4P12235 298 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 TPT1P13693 172 aaKnown RBP2.85□□□□□ -1.95
VPS54-204ENST00000416400 CBR1P16152 277 aa2.85□□□□□ -1.95
VPS54-204ENST00000416400 ZNF32P17041 273 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms