RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 C3orf36Q3SXR2 165 aa12.4□□□□□ -0.43
USP4-203ENST00000415188 TMEM182Q6ZP80 229 aaPredicted RBP12.4□□□□□ -0.43
USP4-203ENST00000415188 FAM213BQ8TBF2 198 aa12.4□□□□□ -0.43
USP4-203ENST00000415188 COA4Q9NYJ1 87 aa12.4□□□□□ -0.43
USP4-203ENST00000415188 KCNS2Q9ULS6 477 aa12.4□□□□□ -0.43
USP4-203ENST00000415188 PRRC2AP48634 2157 aaKnown RBP12.39□□□□□ -0.43
USP4-203ENST00000415188 KIAA1324LA8MWY0 1029 aaPredicted RBP12.39□□□□□ -0.43
USP4-203ENST00000415188 H0YL77 283 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 TXNL1O43396 289 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 TMEM50AO95807 157 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 PAX9P55771 341 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 SMIM21Q3B7S5 101 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 ACP7Q6ZNF0 438 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 BEND4Q6ZU67 534 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 BHLHA15Q7RTS1 189 aaPredicted RBP12.39□□□□□ -0.43
USP4-203ENST00000415188 ODF3L1Q8IXM7 274 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 C11orf53Q8IXP5 236 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 ZNF645Q8N7E2 425 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 TMEM171Q8WVE6 324 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 GALMQ96C23 342 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 GPHA2Q96T91 129 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 SFXN3Q9BWM7 321 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 SMCO4Q9NRQ5 59 aa12.39□□□□□ -0.43
USP4-203ENST00000415188 C2CD3Q4AC94 2353 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 MTORP42345 2549 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 IGHV2OR16-5A0A0B4J2B6 119 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 A0A0G2JRQ6 117 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 OR5H1A6NKK0 313 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 C9JQL5 133 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 ATP6V1G2-DDX39BF2Z307 99 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 TNFSF13O75888 250 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 CGAP01215 116 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 IFNA5P01569 189 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 IGKV1-39P01597 117 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 HBE1P02100 147 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 IGKV1D-39P04432 117 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 CEACAM6P40199 344 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 RAB2AP61019 212 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 CXorf67Q86X51 503 aaPredicted RBP12.38□□□□□ -0.43
USP4-203ENST00000415188 FAM90A1Q86YD7 464 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 CBLN2Q8IUK8 224 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 DRAM1Q8N682 238 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 OR10Z1Q8NGY1 313 aa12.38□□□□□ -0.43
USP4-203ENST00000415188 PARD6GQ9BYG4 376 aaPredicted RBP12.38□□□□□ -0.43
USP4-203ENST00000415188 ITPR3Q14573 2671 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 SYNGR2O43760 224 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 OR8U8P0C7N1 319 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 EPHA1P21709 976 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 OMGP23515 440 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 PPT1P50897 306 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 RIPPLY3P57055 190 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 CATR1Q13166 79 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 AKR1C8PQ5T2L2 129 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 TMEM88Q6PEY1 159 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 WDR82Q6UXN9 313 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 NINJ1Q92982 152 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 STARD4Q96DR4 205 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 EIF5A2Q9GZV4 153 aaKnown RBP12.37□□□□□ -0.43
USP4-203ENST00000415188 SLC35B3Q9H1N7 401 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 UNKLQ9H9P5 680 aaKnown RBP12.37□□□□□ -0.43
USP4-203ENST00000415188 CACNG5Q9UF02 275 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 OR14J1Q9UGF5 321 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 RNF150Q9ULK6 438 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 PPP1R3CQ9UQK1 317 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 PRELID3BQ9Y3B1 194 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 MMP24Q9Y5R2 645 aa12.37□□□□□ -0.43
USP4-203ENST00000415188 ZNF469Q96JG9 3925 aaPredicted RBP12.37□□□□□ -0.43
USP4-203ENST00000415188 ZFHX3Q15911 3703 aa12.36□□□□□ -0.43
USP4-203ENST00000415188 IGHV1-18A0A0C4DH31 117 aa12.36□□□□□ -0.43
USP4-203ENST00000415188 A6NLC8 198 aa12.36□□□□□ -0.43
USP4-203ENST00000415188 CST7O76096 145 aa12.36□□□□□ -0.43
USP4-203ENST00000415188 IGKV1-5P01602 117 aa12.36□□□□□ -0.43
USP4-203ENST00000415188 IL2RGP31785 369 aa12.36□□□□□ -0.43
USP4-203ENST00000415188 ZNF585BQ52M93 769 aa12.36□□□□□ -0.43
USP4-203ENST00000415188 C15orf54Q8N8G6 183 aa12.36□□□□□ -0.43
USP4-203ENST00000415188 FOXC2Q99958 501 aa12.36□□□□□ -0.43
USP4-203ENST00000415188 PARP12Q9H0J9 701 aaKnown RBP12.36□□□□□ -0.43
USP4-203ENST00000415188 KIAA1456Q9P272 454 aa12.36□□□□□ -0.43
USP4-203ENST00000415188 ABCA4P78363 2273 aa12.36□□□□□ -0.43
USP4-203ENST00000415188 TRAV1-1A0A0B4J248 108 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 TRAV39A0A0B4J263 110 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 A8MXE2 369 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 C12orf77C9JDV5 145 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 PSPNO60542 156 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 PTBP3O95758 552 aaKnown RBP12.35□□□□□ -0.43
USP4-203ENST00000415188 F12P00748 615 aaPredicted RBP12.35□□□□□ -0.43
USP4-203ENST00000415188 OR3A1P47881 315 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 FHITP49789 147 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 HBG1P69891 147 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 HBG2P69892 147 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 PRR18Q8N4B5 295 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 ZNF610Q8N9Z0 462 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 RBMXL1Q96E39 390 aaKnown RBP12.35□□□□□ -0.43
USP4-203ENST00000415188 PSMG3Q9BT73 122 aaPredicted RBP12.35□□□□□ -0.43
USP4-203ENST00000415188 TUBA4BQ9H853 241 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 MLXQ9UH92 298 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 LAMP3Q9UQV4 416 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 SLC25A15Q9Y619 301 aa12.35□□□□□ -0.43
USP4-203ENST00000415188 SETD2Q9BYW2 2564 aaPredicted RBP12.35□□□□□ -0.43
USP4-203ENST00000415188 A0A1W2PPR1 153 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms