RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 HRASP01112 189 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 CD8AP01732 235 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 CD200P41217 278 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 PMS2P11Q13670 270 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 C1QTNF5Q9BXJ0 243 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 KIAA1456Q9P272 454 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 TMEM210A6NLX4 147 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 E9PLN8 166 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 MMP7P09237 267 aaPredicted RBP9.53□□□□□ -0.88
PTPRF-204ENST00000412568 PAX6P26367 422 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 CHRNA7P36544 502 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 ID4P47928 161 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 TMPRSS3P57727 454 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 PRB3Q04118 309 aaPredicted RBP9.53□□□□□ -0.88
PTPRF-204ENST00000412568 FFAR4Q5NUL3 377 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 LY6G6FQ5SQ64 297 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 ZNF818PQ6ZRF7 136 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 SSX7Q7RTT5 188 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 SSMEM1Q8WWF3 244 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 NUDT16L1Q9BRJ7 211 aaKnown RBP9.53□□□□□ -0.88
PTPRF-204ENST00000412568 GAL3ST2Q9H3Q3 398 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 NUP210Q8TEM1 1887 aaPredicted RBP9.53□□□□□ -0.88
PTPRF-204ENST00000412568 PPIAL4EA0A075B759 164 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 A0A0A6YYD4 124 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 LOC390937A0A1W2PQ73 354 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 XKRY2A2RUG3 117 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 PPIAL4DF5H284 164 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 SPINK4O60575 86 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 CLN5O75503 358 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 ZNF735P0CB33 412 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 PPIAL4FP0DN26 164 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 COX5BP10606 129 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 MUC1P15941 1255 aaPredicted RBP9.53□□□□□ -0.88
PTPRF-204ENST00000412568 SUB1P53999 127 aaKnown RBP eCLIP9.53□□□□□ -0.88
PTPRF-204ENST00000412568 ZNF383Q8NA42 475 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 SLC25A10Q9UBX3 287 aaPredicted RBP9.53□□□□□ -0.88
PTPRF-204ENST00000412568 PPIAL4AQ9Y536 164 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 POMT1Q9Y6A1 747 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 ANKHD1Q8IWZ3 2542 aaKnown RBP9.52□□□□□ -0.89
PTPRF-204ENST00000412568 IGHV3-21A0A0B4J1V1 117 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 IGKV1-12A0A0C4DH73 117 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 F6UZH7 168 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 SCGB2A1O75556 95 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 IGKV1D-12P01611 117 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 MDKP21741 143 aaPredicted RBP9.52□□□□□ -0.89
PTPRF-204ENST00000412568 ATP6V0CP27449 155 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 RPL11P62913 178 aaKnown RBP9.52□□□□□ -0.89
PTPRF-204ENST00000412568 TIGITQ495A1 244 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 MYPOPQ86VE0 399 aaPredicted RBP9.52□□□□□ -0.89
PTPRF-204ENST00000412568 VKORC1L1Q8N0U8 176 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 DTD1Q8TEA8 209 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 MISP3Q96FF7 219 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 RBFOX3A6NFN3 312 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 DEDDO75618 318 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 OPRK1P41145 380 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 GABRA6Q16445 453 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 IL22RA2Q969J5 263 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 MOB3AQ96BX8 217 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 TP53RKQ96S44 253 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 Q9N2K0 584 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 LTBP2Q14767 1821 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 TRBV23-1A0A0A0MS06 115 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 F8VVB4 439 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 F8VWA3 439 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 HKR1P10072 659 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 CSRP1P21291 193 aaKnown RBP9.52□□□□□ -0.89
PTPRF-204ENST00000412568 B3GALT5-AS1P59052 145 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 IL24Q13007 206 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 IQCJQ1A5X6 159 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 MS4A10Q96PG2 267 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 RAB1BQ9H0U4 201 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 PROK2Q9HC23 129 aa9.52□□□□□ -0.89
PTPRF-204ENST00000412568 LOC105371267A0A1B0GV96 52 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 PGLYRP1O75594 196 aaPredicted RBP9.51□□□□□ -0.89
PTPRF-204ENST00000412568 HOXD4P09016 255 aaPredicted RBP9.51□□□□□ -0.89
PTPRF-204ENST00000412568 TMEM252Q8N6L7 170 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 RTBDNQ9BSG5 229 aaPredicted RBP9.51□□□□□ -0.89
PTPRF-204ENST00000412568 COL4A4P53420 1690 aaPredicted RBP9.51□□□□□ -0.89
PTPRF-204ENST00000412568 ODAMA1E959 279 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 RNF222A6NCQ9 220 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 MGST3O14880 152 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 LILRA1O75019 489 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 SUMO1P63165 101 aaKnown RBP9.51□□□□□ -0.89
PTPRF-204ENST00000412568 ACOT6Q3I5F7 207 aaPredicted RBP9.51□□□□□ -0.89
PTPRF-204ENST00000412568 FAM166AQ6J272 317 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 LRP11Q86VZ4 500 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 LDLRAD3Q86YD5 345 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 RAB1CQ92928 201 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 TNFRSF19Q9NS68 423 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 CLCF1Q9UBD9 225 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 CHD8Q9HCK8 2581 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 MAP1LC3B2A6NCE7 125 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 CA11O75493 328 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 PMCHP20382 165 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 RAB7AP51149 207 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 HGFACQ04756 655 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 SPACA3Q8IXA5 215 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 AQP10Q96PS8 301 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 MAP1LC3BQ9GZQ8 125 aa9.51□□□□□ -0.89
PTPRF-204ENST00000412568 TMEM222Q9H0R3 208 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms