RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 FBXO24O75426 580 aa13.46□□□□□ -0.25
CLN3-203ENST00000357806 PTHLHP12272 177 aa13.46□□□□□ -0.25
CLN3-203ENST00000357806 ZNF182P17025 639 aaPredicted RBP13.46□□□□□ -0.25
CLN3-203ENST00000357806 MC5RP33032 325 aa13.46□□□□□ -0.25
CLN3-203ENST00000357806 TMBIM6P55061 237 aa13.46□□□□□ -0.25
CLN3-203ENST00000357806 ACTBP60709 375 aa13.46□□□□□ -0.25
CLN3-203ENST00000357806 GLDNQ6ZMI3 551 aaPredicted RBP13.46□□□□□ -0.25
CLN3-203ENST00000357806 HOGA1Q86XE5 327 aa13.46□□□□□ -0.25
CLN3-203ENST00000357806 FAM71E2Q8N5Q1 922 aa13.46□□□□□ -0.25
CLN3-203ENST00000357806 C11orf44Q8N8P7 122 aa13.46□□□□□ -0.25
CLN3-203ENST00000357806 WIPF2Q8TF74 440 aaPredicted RBP13.46□□□□□ -0.25
CLN3-203ENST00000357806 PLSCR3Q9NRY6 295 aa13.46□□□□□ -0.25
CLN3-203ENST00000357806 GAB2Q9UQC2 676 aa13.46□□□□□ -0.25
CLN3-203ENST00000357806 WASHC3Q9Y3C0 194 aa13.46□□□□□ -0.25
CLN3-203ENST00000357806 SMIM31A0A1B0GVY4 71 aa13.45□□□□□ -0.26
CLN3-203ENST00000357806 H0YJW9 148 aa13.45□□□□□ -0.26
CLN3-203ENST00000357806 H7C2Y5 167 aa13.45□□□□□ -0.26
CLN3-203ENST00000357806 HPGDSO60760 199 aa13.45□□□□□ -0.26
CLN3-203ENST00000357806 IGHG2P01859 326 aa13.45□□□□□ -0.26
CLN3-203ENST00000357806 SOX6P35712 828 aa13.45□□□□□ -0.26
CLN3-203ENST00000357806 F2RL1P55085 397 aa13.45□□□□□ -0.26
CLN3-203ENST00000357806 SLC35E3Q7Z769 313 aa13.45□□□□□ -0.26
CLN3-203ENST00000357806 GVQW1Q8N7I0 195 aa13.45□□□□□ -0.26
CLN3-203ENST00000357806 OR5AN1Q8NGI8 311 aa13.45□□□□□ -0.26
CLN3-203ENST00000357806 RBMXL1Q96E39 390 aaKnown RBP13.45□□□□□ -0.26
CLN3-203ENST00000357806 IFT46Q9NQC8 304 aa13.45□□□□□ -0.26
CLN3-203ENST00000357806 SDHAF2Q9NX18 166 aa13.45□□□□□ -0.26
CLN3-203ENST00000357806 TRRAPQ9Y4A5 3859 aa13.44□□□□□ -0.26
CLN3-203ENST00000357806 M0R1X1 148 aa13.44□□□□□ -0.26
CLN3-203ENST00000357806 NBR2O15453 112 aa13.44□□□□□ -0.26
CLN3-203ENST00000357806 KCNAB3O43448 404 aa13.44□□□□□ -0.26
CLN3-203ENST00000357806 PROP1O75360 226 aa13.44□□□□□ -0.26
CLN3-203ENST00000357806 APOA2P02652 100 aa13.44□□□□□ -0.26
CLN3-203ENST00000357806 C2orf68Q2NKX9 166 aa13.44□□□□□ -0.26
CLN3-203ENST00000357806 CENPVQ7Z7K6 275 aaPredicted RBP13.44□□□□□ -0.26
CLN3-203ENST00000357806 FOXRED2Q8IWF2 684 aa13.44□□□□□ -0.26
CLN3-203ENST00000357806 DRAXINQ8NBI3 349 aaPredicted RBP13.44□□□□□ -0.26
CLN3-203ENST00000357806 KIAA1456Q9P272 454 aa13.44□□□□□ -0.26
CLN3-203ENST00000357806 OR2W1Q9Y3N9 320 aa13.44□□□□□ -0.26
CLN3-203ENST00000357806 MEIS3P1A6NDR6 274 aa13.43□□□□□ -0.26
CLN3-203ENST00000357806 RBBP9O75884 186 aa13.43□□□□□ -0.26
CLN3-203ENST00000357806 ELK1P19419 428 aa13.43□□□□□ -0.26
CLN3-203ENST00000357806 NFYAP23511 347 aaPredicted RBP13.43□□□□□ -0.26
CLN3-203ENST00000357806 SPCS2Q15005 226 aa13.43□□□□□ -0.26
CLN3-203ENST00000357806 OR5AU1Q8NGC0 362 aa13.43□□□□□ -0.26
CLN3-203ENST00000357806 NECAP2Q9NVZ3 263 aa13.43□□□□□ -0.26
CLN3-203ENST00000357806 FAM25AB3EWG3 89 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 FAM25CB3EWG5 89 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 FAM25GB3EWG6 89 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 CD28P10747 220 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 CNTFRP26992 372 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 PRSS3P35030 304 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 LUMP51884 338 aaPredicted RBP13.42□□□□□ -0.26
CLN3-203ENST00000357806 PDPNQ86YL7 162 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 ZNF645Q8N7E2 425 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 ZNF383Q8NA42 475 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 OR4X2Q8NGF9 303 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 CHPT1Q8WUD6 406 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 SNAPC3Q92966 411 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 PSMB11A5LHX3 300 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 AP4M1O00189 453 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 NDUFA3O95167 84 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 HLA-DQB1P01920 261 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 FCER2P06734 321 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 THBS3P49746 956 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 NPBQ8NG41 125 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 OR5AP2Q8NGF4 316 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 ISOC1Q96CN7 298 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 RITA1Q96K30 269 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 RNF5Q99942 180 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 SLC35D1Q9NTN3 355 aa13.42□□□□□ -0.26
CLN3-203ENST00000357806 MRPS7Q9Y2R9 242 aaKnown RBP13.42□□□□□ -0.26
CLN3-203ENST00000357806 J3QRK9 145 aa13.41□□□□□ -0.26
CLN3-203ENST00000357806 PLXNB1O43157 2135 aa13.41□□□□□ -0.26
CLN3-203ENST00000357806 SLC22A5O76082 557 aa13.41□□□□□ -0.26
CLN3-203ENST00000357806 CSF1P09603 554 aa13.41□□□□□ -0.26
CLN3-203ENST00000357806 TAGLNQ01995 201 aaKnown RBP13.41□□□□□ -0.26
CLN3-203ENST00000357806 CBX3Q13185 183 aa13.41□□□□□ -0.26
CLN3-203ENST00000357806 C5orf64Q2M2E5 130 aa13.41□□□□□ -0.26
CLN3-203ENST00000357806 HIST2H2BDQ6DRA6 164 aa13.41□□□□□ -0.26
CLN3-203ENST00000357806 TREML4Q6UXN2 200 aa13.41□□□□□ -0.26
CLN3-203ENST00000357806 STPG2Q8N412 459 aa13.41□□□□□ -0.26
CLN3-203ENST00000357806 C5orf30Q96GV9 206 aa13.41□□□□□ -0.26
CLN3-203ENST00000357806 ADTRPQ96IZ2 230 aa13.41□□□□□ -0.26
CLN3-203ENST00000357806 NOL4LQ96MY1 436 aaPredicted RBP13.41□□□□□ -0.26
CLN3-203ENST00000357806 CITED2Q99967 270 aaPredicted RBP13.41□□□□□ -0.26
CLN3-203ENST00000357806 HSPB9Q9BQS6 159 aa13.41□□□□□ -0.26
CLN3-203ENST00000357806 CCDC59Q9P031 241 aaKnown RBP13.41□□□□□ -0.26
CLN3-203ENST00000357806 ZNF107Q9UII5 783 aaPredicted RBP13.41□□□□□ -0.26
CLN3-203ENST00000357806 ANAPC10Q9UM13 185 aa13.41□□□□□ -0.26
CLN3-203ENST00000357806 H3BMQ9 156 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 TUSC2O75896 110 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 HLA-DRB1P01911 266 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 IGKV1-16P04430 117 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 OR5H8P0DN80 308 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 LINC00205P59089 165 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 SLC35B1P78383 322 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 CDK10Q15131 360 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 PLGLAQ15195 96 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 NDUFA11Q86Y39 141 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms