RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SMAD4Q13485 552 aaKnown RBP7.53□□□□□ -1.2
RTN3-202ENST00000339997 EIF4EBP2Q13542 120 aaPredicted RBP7.53□□□□□ -1.2
RTN3-202ENST00000339997 SPATA45Q537H7 98 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 COL5A1-AS1Q5SY13 56 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 DPH3P1Q9H4G8 78 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 IL36RNQ9UBH0 155 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 F11RQ9Y624 299 aaKnown RBP7.53□□□□□ -1.2
RTN3-202ENST00000339997 MUC21A0A0G2JKD1 596 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 A0A0J9YW62 118 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 MUC21A0A140T8X8 626 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 KLF4O43474 513 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 SYNGR1O43759 233 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 NPBWR2P48146 333 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 KHDC3LQ587J8 217 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 MUC21Q5SSG8 566 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 HCP5Q6MZN7 132 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 FREM3P0C091 2139 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 CTXND1A0A1B0GTU2 59 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 ASAH2BP0C7U1 165 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 CBLN1P23435 193 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 SNAI3Q3KNW1 292 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 FDX2Q6P4F2 183 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 OR1P1Q8NH06 330 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 TM4SF19Q96DZ7 209 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 CRISPLD2Q9H0B8 497 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 LPAR2Q9HBW0 351 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 COX6CP09669 75 aa7.52□□□□□ -1.2
RTN3-202ENST00000339997 CCL8P80075 99 aa7.52□□□□□ -1.2
RTN3-202ENST00000339997 TNFAIP6P98066 277 aaPredicted RBP7.52□□□□□ -1.2
RTN3-202ENST00000339997 TMEM97Q5BJF2 176 aa7.52□□□□□ -1.2
RTN3-202ENST00000339997 ZNF766Q5HY98 468 aa7.52□□□□□ -1.2
RTN3-202ENST00000339997 ANAPC16Q96DE5 110 aa7.52□□□□□ -1.2
RTN3-202ENST00000339997 OR2H1Q9GZK4 316 aa7.52□□□□□ -1.2
RTN3-202ENST00000339997 ZDHHC8Q9ULC8 765 aa7.52□□□□□ -1.2
RTN3-202ENST00000339997 YBX2Q9Y2T7 364 aaKnown RBP7.52□□□□□ -1.2
RTN3-202ENST00000339997 MOSPD3O75425 235 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 LRRC10Q5BKY1 277 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 SLC25A40Q8TBP6 338 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 RAB24Q969Q5 203 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 FOXJ2Q9P0K8 574 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 COL4A5P29400 1685 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 MKRN2OSH3BPM6 223 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 CORTO00230 105 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 RAMP1O60894 148 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 HOXA6P31267 233 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 SOX8P57073 446 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 WDR73Q6P4I2 378 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 PRNTQ86SH4 94 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 BPIFA4PQ86YQ2 179 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 MAP1LC3CQ9BXW4 147 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 PARD6GQ9BYG4 376 aaPredicted RBP7.52□□□□□ -1.21
RTN3-202ENST00000339997 KCNMB2Q9Y691 235 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 DOCK3Q8IZD9 2030 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 COL6A3P12111 3177 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 IGHV1OR15-9A0A0B4J2B8 117 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 KLK10O43240 276 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 CYB5R3P00387 301 aaPredicted RBP7.52□□□□□ -1.21
RTN3-202ENST00000339997 CDX1P47902 265 aaPredicted RBP7.52□□□□□ -1.21
RTN3-202ENST00000339997 ERVFRD-1P60508 538 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 RPL30P62888 115 aaKnown RBP7.52□□□□□ -1.21
RTN3-202ENST00000339997 TM4SF20Q53R12 229 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 PQLC2Q6ZP29 291 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 HARBI1Q96MB7 349 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 NPDC1Q9NQX5 325 aaPredicted RBP7.52□□□□□ -1.21
RTN3-202ENST00000339997 THYN1Q9P016 225 aa7.52□□□□□ -1.21
RTN3-202ENST00000339997 PPIHO43447 177 aaKnown RBP7.51□□□□□ -1.21
RTN3-202ENST00000339997 CD82P27701 267 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 SRIP30626 198 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 BRS3P32247 399 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 PSG4Q00888 419 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 Q5PR19 223 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 Q8IYB0 196 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 SPEM1Q8N4L4 309 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 ZNF738Q8NE65 137 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 ADAMTS17Q8TE56 1095 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 KLK15Q9H2R5 256 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 MANBALQ9NQG1 85 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 RPRMQ9NS64 109 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 PILRAQ9UKJ1 303 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 MOB4Q9Y3A3 225 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 LOC107984156A0A0G2JMH3 177 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 J3QR06 171 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 CLDN14O95500 239 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 ZNF708P17019 499 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 NAAAQ02083 359 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 RHBDD2Q6NTF9 364 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 WFDC3Q8IUB2 231 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 ARL17AQ8IVW1 177 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 ABHD12Q8N2K0 398 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 ZNF502Q8TBZ5 544 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 PIPOXQ9P0Z9 390 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 FAM90A27PA6NNH2 459 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 ZG16O60844 167 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 GFRA1P56159 465 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 LINC01590Q5TEZ4 76 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 AMMECR1LQ6DCA0 310 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 OR2Y1Q8NGV0 311 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 OR4S2Q8NH73 311 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 GPR146Q96CH1 333 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 TRBV5-5A0A0J9YX44 114 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms