RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 ZGRF1Q86YA3 2104 aa12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 A0A1B0GW64 132 aa12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 ODAMA1E959 279 aa12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 COLCA2A8K830 154 aa12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 SPINT2O43291 252 aa12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 IGHV3-13P01766 116 aa12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 CRYBA1P05813 215 aa12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 P0C879 139 aa12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 KLF3P57682 345 aaPredicted RBP12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 ZNRF1Q8ND25 227 aa12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 SNIP1Q8TAD8 396 aaKnown RBP12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 C14orf79Q96F83 325 aa12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 AGMATQ9BSE5 352 aa12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 COA4Q9NYJ1 87 aa12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 KIAA1456Q9P272 454 aa12.39□□□□□ -0.43
CLCNKA-201ENST00000331433 ROS1P08922 2347 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 TSPAN9O75954 239 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 IGHV3-7P01780 117 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 CEBPGP53567 150 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 NKX6-1P78426 367 aaPredicted RBP12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 FAM27E3Q08E93 113 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 FAM201AQ5SY85 155 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 SP5Q6BEB4 398 aaPredicted RBP12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 OR8G2PQ6IF36 304 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 SCGB1C1Q8TD33 95 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 SAV1Q9H4B6 383 aaPredicted RBP12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 FBP1P09467 338 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 BMP5P22003 454 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 TIMP3P35625 211 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 HBG1P69891 147 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 HBG2P69892 147 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 TLE4Q04727 773 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 SOHLH1Q5JUK2 328 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 ITLN1Q8WWA0 313 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 ISOC2Q96AB3 205 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 MEGF10Q96KG7 1140 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 CLN8Q9UBY8 286 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 HSPB7Q9UBY9 170 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 DSCAMO60469 2012 aa12.38□□□□□ -0.43
CLCNKA-201ENST00000331433 BTBD17A6NE02 478 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 LRRC30A6NM36 301 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 FAM90A26D6RGX4 464 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 CRYABP02511 175 aaKnown RBP12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 GLRXP35754 106 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 HNF4GQ14541 408 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 MSMO1Q15800 293 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 OR4C12Q96R67 309 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 RPRMQ9NS64 109 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 GNG12Q9UBI6 72 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 PRELID3BQ9Y3B1 194 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 ADGRG4Q8IZF6 3080 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 SPINK9Q5DT21 86 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 ZFP82Q8N141 532 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 PUS1Q9Y606 427 aaKnown RBP eCLIP12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 CEP295Q9C0D2 2601 aa12.37□□□□□ -0.43
CLCNKA-201ENST00000331433 UBE2L5PA0A1B0GUS4 154 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 CD55P08174 381 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 SELLP14151 372 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 EDDM3BP56851 147 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 RPS16P62249 146 aaKnown RBP12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 HTD2P86397 168 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 PAX5Q02548 391 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 SLC38A11Q08AI6 406 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 ICAM4Q14773 271 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 EIF2S3LQ2VIR3 472 aaKnown RBP12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 LRRC75BQ2VPJ9 315 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 AVPI1Q5T686 147 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 ZDHHC16Q969W1 377 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 SFXN3Q9BWM7 321 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 PRELID1Q9Y255 219 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 PROP1O75360 226 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 CLDN14O95500 239 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 ADH4P08319 380 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 TMEM14EPQ6UXP3 125 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 DPPA3Q6W0C5 159 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 SSX7Q7RTT5 188 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 CLDND2Q8NHS1 167 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 C2CD4CQ8TF44 421 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 SNX22Q96L94 193 aa12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 MRPL37Q9BZE1 423 aaKnown RBP12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.36□□□□□ -0.43
CLCNKA-201ENST00000331433 MGST3O14880 152 aa12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 ZG16O60844 167 aa12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 RBMXL2O75526 392 aaKnown RBP12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 EIF3GO75821 320 aaKnown RBP eCLIP12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 SCAF4O95104 1147 aaKnown RBP12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 CEACAM8P31997 349 aaPredicted RBP12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 CFHR2P36980 270 aa12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 PLA2G5P39877 138 aa12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 GPR12P47775 334 aa12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 NCR3LG1Q68D85 454 aa12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 TRAT1Q6PIZ9 186 aa12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 FAM180AQ6UWF9 173 aa12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 ZNF66Q6ZN08 573 aa12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 H2BFWTQ7Z2G1 175 aa12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 FAM57AQ8TBR7 257 aa12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 WDR61Q9GZS3 305 aaKnown RBP12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 SMDT1Q9H4I9 107 aa12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 HCFC1P51610 2035 aa12.35□□□□□ -0.43
CLCNKA-201ENST00000331433 IGLV3-9A0A075B6K5 115 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms