RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ZNF703Q9H7S9 590 aaPredicted RBP11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 TMEM9BQ9NQ34 198 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 SH2D1BO14796 132 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 CLDN1O95832 211 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 HBG1P69891 147 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 HBG2P69892 147 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 SPINK9Q5DT21 86 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 FFAR4Q5NUL3 377 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 ZIC4Q8N9L1 334 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 PINX1Q96BK5 328 aaKnown RBP11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 NEIL1Q96FI4 390 aaPredicted RBP11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 CIB3Q96Q77 187 aaPredicted RBP11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 FGF23Q9GZV9 251 aaPredicted RBP11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 COMPP49747 757 aaPredicted RBP11.4□□□□□ -0.59
CCDC88C-201ENST00000331194 RNPS1Q15287 305 aaKnown RBP11.4□□□□□ -0.59
CCDC88C-201ENST00000331194 KIAA0895LQ68EN5 471 aa11.4□□□□□ -0.59
CCDC88C-201ENST00000331194 TMEM42Q69YG0 159 aa11.4□□□□□ -0.59
CCDC88C-201ENST00000331194 SLC23A3Q6PIS1 610 aa11.4□□□□□ -0.59
CCDC88C-201ENST00000331194 TMEM144Q7Z5S9 345 aa11.4□□□□□ -0.59
CCDC88C-201ENST00000331194 OR1L1Q8NH94 360 aa11.4□□□□□ -0.59
CCDC88C-201ENST00000331194 FGF21Q9NSA1 209 aa11.4□□□□□ -0.59
CCDC88C-201ENST00000331194 ELOVL5Q9NYP7 299 aa11.4□□□□□ -0.59
CCDC88C-201ENST00000331194 CCL2P13500 99 aa11.39□□□□□ -0.59
CCDC88C-201ENST00000331194 CCNOP22674 350 aa11.39□□□□□ -0.59
CCDC88C-201ENST00000331194 GPM6AP51674 278 aa11.39□□□□□ -0.59
CCDC88C-201ENST00000331194 KRTDAPP60985 99 aa11.39□□□□□ -0.59
CCDC88C-201ENST00000331194 COL5A1-AS1Q5SY13 56 aa11.39□□□□□ -0.59
CCDC88C-201ENST00000331194 NCOR1P1Q9H4R4 102 aa11.39□□□□□ -0.59
CCDC88C-201ENST00000331194 RYDENQ9NUL5 291 aaKnown RBP11.39□□□□□ -0.59
CCDC88C-201ENST00000331194 M0QZ24 198 aa11.39□□□□□ -0.59
CCDC88C-201ENST00000331194 PSG4Q00888 419 aa11.39□□□□□ -0.59
CCDC88C-201ENST00000331194 TMEM183BQ1AE95 376 aa11.39□□□□□ -0.59
CCDC88C-201ENST00000331194 TUBG2Q9NRH3 451 aa11.39□□□□□ -0.59
CCDC88C-201ENST00000331194 TRBV20OR9-2A0A075B6H5 130 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 hCG_38984A0A1B0GV85 526 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 LILRA5A6NI73 299 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 TIAF1O95411 115 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 CELA2AP08217 269 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 ZXDAP98168 799 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 FAM27BQ5VT28 67 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 SLC35E1Q96K37 410 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 OR6C1Q96RD1 312 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 CLN8Q9UBY8 286 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 FBXL7Q9UJT9 491 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 CTXND1A0A1B0GTU2 59 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 SLC17A3O00476 420 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 TNFSF11O14788 317 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 SPINK4O60575 86 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 IGHV3-9P01782 118 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 LHX2P50458 406 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 ZNF585BQ52M93 769 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 RAET1LQ5VY80 246 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 LYG1Q8N1E2 194 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 ALKBH7Q9BT30 221 aaPredicted RBP11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 SAMD10Q9BYL1 202 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 LOC102724200A0A096LPH7 203 aaPredicted RBP11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 TRAV38-1A0A0B4J264 116 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 SIRPB1O00241 398 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 MLNRO43193 412 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 WDR1O75083 606 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 IGLV2-14P01704 120 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 TPPP2P59282 170 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 LCN2P80188 198 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 ZNF324BQ6AW86 544 aaPredicted RBP11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 RHBDD2Q6NTF9 364 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 ERASQ7Z444 233 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 BTF3L4Q96K17 158 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 MTCH1Q9NZJ7 389 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 ATP23Q9Y6H3 246 aa11.38□□□□□ -0.59
CCDC88C-201ENST00000331194 LOC102725191A0A1B0GVB3 256 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 NKX6-3A6NJ46 265 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 MSMO1Q15800 293 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 BAGE3Q86Y29 109 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 BAGE2Q86Y30 109 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 KMT5CQ86Y97 462 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 NUDT10Q8NFP7 164 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 FSCN3Q9NQT6 498 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 IL36GQ9NZH8 169 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 MMP17Q9ULZ9 603 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 OR2W1Q9Y3N9 320 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 RBM7Q9Y580 266 aaKnown RBP11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 R4GN57 208 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 SPTBN2O15020 2390 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 SYNGR1O43759 233 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 CRISP2P16562 243 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 C1orf185Q5T7R7 199 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 FAM53AQ6NSI3 398 aaPredicted RBP11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 FOXL2NBQ6ZUU3 175 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 ATOH7Q8N100 152 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 TSTD1Q8NFU3 115 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 CADM4Q8NFZ8 388 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 OR5AU1Q8NGC0 362 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 CLDN23Q96B33 292 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 KCNS2Q9ULS6 477 aa11.37□□□□□ -0.59
CCDC88C-201ENST00000331194 SELENOTP62341 195 aa11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 SMIM15Q7Z3B0 74 aa11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 SRXN1Q9BYN0 137 aa11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 AKIRIN1Q9H9L7 192 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 DMXL1Q9Y485 3027 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms