RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 MYOGP15173 224 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 HMGA1P17096 107 aaKnown RBP12.49□□□□□ -0.41
COL7A1-201ENST00000328333 KLHDC9Q8NEP7 349 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 CD8AP01732 235 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 SPSB4Q96A44 273 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 SPANXDQ9BXN6 97 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 AICDAQ9GZX7 198 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 J3QR06 171 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 CLEC1BQ9P126 229 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 TRGV5A0A0B4J1U4 118 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 IGHV3-20A0A0C4DH32 117 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 MRPL24Q96A35 216 aaKnown RBP12.48□□□□□ -0.41
COL7A1-201ENST00000328333 PLSCR2Q9NRY7 297 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 PXMP4Q9Y6I8 212 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 FGF5P12034 268 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 INSL4Q14641 139 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 SLC23A3Q6PIS1 610 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 GSN-AS1Q9NRJ2 163 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 AUP1Q9Y679 476 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 LYPD8Q6UX82 237 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 KCNMB1Q16558 191 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 PRNTQ86SH4 94 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 NDUFB4O95168 129 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 FBXO17Q96EF6 278 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 DENND4AQ7Z401 1863 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 PRDX2P32119 198 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 TMUB1Q9BVT8 246 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 NCOA6Q14686 2063 aaPredicted RBP12.48□□□□□ -0.41
COL7A1-201ENST00000328333 TANC2Q9HCD6 1990 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 H7C1H1 209 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 LYZL2Q7Z4W2 148 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 MGST2Q99735 147 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 PNLIPP16233 465 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 GNG10P50151 68 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 HIST1H1AQ02539 215 aaPredicted RBP12.48□□□□□ -0.41
COL7A1-201ENST00000328333 WDR25Q64LD2 544 aaPredicted RBP12.48□□□□□ -0.41
COL7A1-201ENST00000328333 OR11G2Q8NGC1 345 aa12.48□□□□□ -0.41
COL7A1-201ENST00000328333 GEMIN7Q9H840 131 aaKnown RBP12.48□□□□□ -0.41
COL7A1-201ENST00000328333 MOSPD3O75425 235 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 IGHV3-15A0A0B4J1V0 119 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 MED19A0JLT2 244 aaPredicted RBP12.47□□□□□ -0.41
COL7A1-201ENST00000328333 RPL36A-HNRNPH2H7BZ11 118 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 CDC42EP2O14613 210 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 SPRY3O43610 288 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 DMRTA1Q5VZB9 504 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 FBLIM1Q8WUP2 373 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 LOXL2Q9Y4K0 774 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 GPR35Q9HC97 309 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 SRIP30626 198 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 RLN3Q8WXF3 142 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 OR8B2Q96RD0 313 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 TMEM56-RWDD3S4R434 201 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 LOC389332A0A1B0GUA5 103 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 TMEM50AO95807 157 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 ISG15P05161 165 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 ZNF645Q8N7E2 425 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 OTPQ5XKR4 325 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 WNT5BQ9H1J7 359 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 PPP1R3EQ9H7J1 279 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 TSPOP30536 169 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 ANAPC13Q9BS18 74 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 ABHD14AQ9BUJ0 271 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 KCNMB2Q9Y691 235 aa12.47□□□□□ -0.41
COL7A1-201ENST00000328333 GCM2O75603 506 aaPredicted RBP12.46□□□□□ -0.41
COL7A1-201ENST00000328333 LINC00869P0C866 280 aa12.46□□□□□ -0.41
COL7A1-201ENST00000328333 MC5RP33032 325 aa12.46□□□□□ -0.41
COL7A1-201ENST00000328333 RBM11P57052 281 aaKnown RBP12.46□□□□□ -0.41
COL7A1-201ENST00000328333 PRSS8Q16651 343 aa12.46□□□□□ -0.41
COL7A1-201ENST00000328333 FAM71F2Q6NXP2 309 aa12.46□□□□□ -0.41
COL7A1-201ENST00000328333 CXCL2P19875 107 aa12.46□□□□□ -0.41
COL7A1-201ENST00000328333 ADAD2Q8NCV1 583 aaKnown RBP12.46□□□□□ -0.41
COL7A1-201ENST00000328333 DERL1Q9BUN8 251 aa12.46□□□□□ -0.41
COL7A1-201ENST00000328333 AKIRIN1Q9H9L7 192 aaPredicted RBP12.46□□□□□ -0.41
COL7A1-201ENST00000328333 J3QT63 122 aa12.46□□□□□ -0.41
COL7A1-201ENST00000328333 TMPRSS2O15393 492 aa12.46□□□□□ -0.41
COL7A1-201ENST00000328333 DLX6P56179 175 aa12.46□□□□□ -0.41
COL7A1-201ENST00000328333 C2orf83Q53S99 150 aa12.46□□□□□ -0.41
COL7A1-201ENST00000328333 IFNL4K9M1U5 179 aa12.46□□□□□ -0.41
COL7A1-201ENST00000328333 SRSF5Q13243 272 aaKnown RBP12.46□□□□□ -0.41
COL7A1-201ENST00000328333 TUBA4BQ9H853 241 aa12.46□□□□□ -0.41
COL7A1-201ENST00000328333 PTPRQQ9UMZ3 2332 aa12.46□□□□□ -0.41
COL7A1-201ENST00000328333 H3BRM9 83 aa12.46□□□□□ -0.42
COL7A1-201ENST00000328333 CEACAM18A8MTB9 384 aa12.46□□□□□ -0.42
COL7A1-201ENST00000328333 PRSS2P07478 247 aa12.46□□□□□ -0.42
COL7A1-201ENST00000328333 GPX4P36969 197 aaPredicted RBP12.46□□□□□ -0.42
COL7A1-201ENST00000328333 OR4D5Q8NGN0 318 aa12.46□□□□□ -0.42
COL7A1-201ENST00000328333 NPDC1Q9NQX5 325 aaPredicted RBP12.46□□□□□ -0.42
COL7A1-201ENST00000328333 SERGEFQ9UGK8 458 aa12.46□□□□□ -0.42
COL7A1-201ENST00000328333 LIPT2A6NK58 231 aa12.46□□□□□ -0.42
COL7A1-201ENST00000328333 IMMP2LQ96T52 175 aa12.46□□□□□ -0.42
COL7A1-201ENST00000328333 TRAV30A0A087WSZ9 112 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 ARL14EPLP0DKL9 152 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 ZNF600Q6ZNG1 722 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 OR2Y1Q8NGV0 311 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 NUDT8Q8WV74 236 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 SPCS1Q9Y6A9 102 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 SH3BGRL3Q9H299 93 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 LTBP4Q8N2S1 1624 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 RRN3P1Q2M238 152 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 TCTN1Q2MV58 587 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms