RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 TMEM14DPA8MWL7 114 aa13.7□□□□□ -0.22
USP42-201ENST00000306177 CSN3P07498 182 aa13.7□□□□□ -0.22
USP42-201ENST00000306177 CRYBA2P53672 197 aa13.7□□□□□ -0.22
USP42-201ENST00000306177 LINC00470Q9BZP3 86 aa13.7□□□□□ -0.22
USP42-201ENST00000306177 MRPL54Q6P161 138 aaKnown RBP13.69□□□□□ -0.22
USP42-201ENST00000306177 TIMP4Q99727 224 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 A0A0G2JMZ2 1700 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 LRRC37A2A6NM11 1700 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 NPIPB9F8W1W9 429 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 SMPD2O60906 423 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 TMEM204Q9BSN7 226 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 IDI2-AS1Q9NZ38 188 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 TUBD1Q9UJT1 453 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 PDCD11Q14690 1871 aaKnown RBP13.69□□□□□ -0.22
USP42-201ENST00000306177 CEACAM18A8MTB9 384 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 KCNMB1Q16558 191 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 TMEM45BQ96B21 275 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 MS4A7Q9GZW8 240 aaPredicted RBP13.69□□□□□ -0.22
USP42-201ENST00000306177 RECKO95980 971 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 CLEC2AQ6UVW9 174 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 FGFRL1Q8N441 504 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 LILRB1Q8NHL6 650 aaPredicted RBP13.69□□□□□ -0.22
USP42-201ENST00000306177 RBKSQ9H477 322 aa13.69□□□□□ -0.22
USP42-201ENST00000306177 TRPM7Q96QT4 1865 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 LRP11Q86VZ4 500 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 CALHM1Q8IU99 346 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 ZMAT5Q9UDW3 170 aaKnown RBP13.68□□□□□ -0.22
USP42-201ENST00000306177 HILPDAQ9Y5L2 63 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 CORTO00230 105 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 RPL8P62917 257 aaKnown RBP13.68□□□□□ -0.22
USP42-201ENST00000306177 NCMAPQ5T1S8 102 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 LDLRAD3Q86YD5 345 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 SELENOHQ8IZQ5 122 aaKnown RBP13.68□□□□□ -0.22
USP42-201ENST00000306177 SNRNP40Q96DI7 357 aaKnown RBP13.68□□□□□ -0.22
USP42-201ENST00000306177 OR10J1P30954 320 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 ELOBQ15370 118 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 HIST3H3Q16695 136 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 MMD2Q8IY49 270 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 P2RX4Q99571 388 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 C5orf66Q9H5L9 145 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 FUT9Q9Y231 359 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 IGKV3-7A0A075B6H7 116 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 FAM90A26D6RGX4 464 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 TBX6O95947 436 aaPredicted RBP13.68□□□□□ -0.22
USP42-201ENST00000306177 PTGDSP41222 190 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 MEOX2P50222 304 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 CXorf66Q5JRM2 361 aaPredicted RBP13.68□□□□□ -0.22
USP42-201ENST00000306177 GPR146Q96CH1 333 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 RSG1Q9BU20 258 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 ZNF703Q9H7S9 590 aaPredicted RBP13.68□□□□□ -0.22
USP42-201ENST00000306177 AKIRIN1Q9H9L7 192 aaPredicted RBP13.68□□□□□ -0.22
USP42-201ENST00000306177 GP6Q9HCN6 339 aa13.68□□□□□ -0.22
USP42-201ENST00000306177 CD74P04233 296 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 RBPMS2Q6ZRY4 209 aaKnown RBP13.67□□□□□ -0.22
USP42-201ENST00000306177 GSX1Q9H4S2 264 aaPredicted RBP13.67□□□□□ -0.22
USP42-201ENST00000306177 JPT1Q9UK76 154 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 CYB5R3P00387 301 aaPredicted RBP13.67□□□□□ -0.22
USP42-201ENST00000306177 HKR1P10072 659 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 SELENOTP62341 195 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 ZNF658BQ4V348 819 aaPredicted RBP13.67□□□□□ -0.22
USP42-201ENST00000306177 NRIP2Q9BQI9 281 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 METTL1Q9UBP6 276 aaKnown RBP13.67□□□□□ -0.22
USP42-201ENST00000306177 IGHV3-72A0A0B4J1Y9 119 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 ISLRO14498 428 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 FAM106CPP0CH98 169 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 NAT2P11245 290 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 TMEM116Q8NCL8 245 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 PRSS1P07477 247 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 NMBP08949 121 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 RFPL3SP0C7P2 107 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 ZNF660Q6AZW8 331 aaPredicted RBP13.67□□□□□ -0.22
USP42-201ENST00000306177 TMEM191AQ9H0A3 160 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 RNF115Q9Y4L5 304 aa13.67□□□□□ -0.22
USP42-201ENST00000306177 MFSD2BA6NFX1 497 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 Q6ZT83 130 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 FAM216AQ8WUB2 273 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 AQP10Q96PS8 301 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 RABAC1Q9UI14 185 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 J3KRW8 73 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 BMPR1BO00238 502 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 DLL1O00548 723 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 HIST1H1BP16401 226 aaKnown RBP13.66□□□□□ -0.22
USP42-201ENST00000306177 NPBWR2P48146 333 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 OVCH2Q7RTZ1 564 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 LRRC75AQ8NAA5 344 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 SOSTQ9BQB4 213 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 SNURFLB1AK76 121 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 MUC1P15941 1255 aaPredicted RBP13.66□□□□□ -0.22
USP42-201ENST00000306177 IER3P46695 156 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 PAFAH1B2P68402 229 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 EIF4E3Q8N5X7 224 aaKnown RBP13.66□□□□□ -0.22
USP42-201ENST00000306177 CYB561D1Q8N8Q1 229 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 FDCSPQ8NFU4 85 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 PRO1933Q9H354 126 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 CSRP2Q16527 193 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 POM121Q96HA1 1249 aa13.66□□□□□ -0.22
USP42-201ENST00000306177 PACRGQ96M98 296 aaPredicted RBP13.66□□□□□ -0.22
USP42-201ENST00000306177 DGAT2L7PQ6IED9 249 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 GBGT1Q8N5D6 347 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 OR5P3Q8WZ94 311 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms