RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PRSS53Q2L4Q9 553 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 NKX2-6A6NCS4 301 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 MGAT2Q10469 447 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 ALKAL1Q6UXT8 129 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 ZNF645Q8N7E2 425 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 PLA2G3Q9NZ20 509 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 MBD1Q9UIS9 605 aaPredicted RBP12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 hCG_38984A0A1B0GV85 526 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 ATP5G2Q06055 141 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 LRTM2Q8N967 370 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 ASPDHA6ND91 283 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 CCL2P13500 99 aa12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 QTRT1Q9BXR0 403 aaKnown RBP12.17□□□□□ -0.46
CCDC88A-201ENST00000263630 MVDP53602 400 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 ACSF3Q4G176 576 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 VGLL1Q99990 258 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 CLDN16Q9Y5I7 305 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 TRAV8-6A0A0B4J262 113 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 AMER3Q8N944 861 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 MS4A6AQ9H2W1 248 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 G6PC2Q9NQR9 355 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 TMEM106BQ9NUM4 274 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 SSC5DA1L4H1 1573 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 AGAP20933 346 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 ATP6V0CP27449 155 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 TREM2Q9NZC2 230 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 POLEQ07864 2286 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 DSPPQ9NZW4 1301 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 TRGC2P03986 189 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 TMEM174Q8WUU8 243 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 PATE1Q8WXA2 126 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 SRSF12Q8WXF0 261 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 DPRXA6NFQ7 191 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 RPL8P62917 257 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 ZNF430Q9H8G1 570 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 SRIP30626 198 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 HOXD3P31249 432 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 INO80CQ6PI98 192 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 DNAJC4Q9NNZ3 241 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 DMRT1Q9Y5R6 373 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 GTF3C1Q12789 2109 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 CDIPTO14735 213 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 RNF182Q8N6D2 247 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 FAM216AQ8WUB2 273 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 NPIPB8E9PQR5 432 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 NPIPB9F8W1W9 429 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 NPIPB7O75200 414 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 GFERP55789 205 aa12.16□□□□□ -0.46
CCDC88A-201ENST00000263630 CTLA4P16410 223 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 DTX2Q86UW9 622 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 MEX3AA1L020 520 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 SPEM1Q8N4L4 309 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 APOBEC4Q8WW27 367 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 EEF1AKMT3Q96AZ1 226 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 SPANXA1Q9NS26 97 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 CD300LDQ6UXZ3 194 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 FIZ1Q96SL8 496 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 TBL2Q9Y4P3 447 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 H0Y980 276 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 LGALS1P09382 135 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 S100A7L2Q5SY68 101 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 SPSB4Q96A44 273 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 DCTN5Q9BTE1 182 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 CCL28Q9NRJ3 127 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 PIK3C2AO00443 1686 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 RPL36A-HNRNPH2H7BZ11 118 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 CD1AP06126 327 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 RAE1P78406 368 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 COL9A3Q14050 684 aaPredicted RBP12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 MMD2Q8IY49 270 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 MRPL32Q9BYC8 188 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 FLRT3Q9NZU0 649 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 TJP1Q07157 1748 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 HMGA2P52926 109 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 RBM11P57052 281 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 TMEM86BQ8N661 226 aa12.15□□□□□ -0.46
CCDC88A-201ENST00000263630 KLK8O60259 260 aa12.15□□□□□ -0.47
CCDC88A-201ENST00000263630 EML2O95834 649 aa12.15□□□□□ -0.47
CCDC88A-201ENST00000263630 DLK2Q6UY11 383 aa12.15□□□□□ -0.47
CCDC88A-201ENST00000263630 PIMREGQ9BSJ6 248 aa12.15□□□□□ -0.47
CCDC88A-201ENST00000263630 FRRS1LQ9P0K9 344 aa12.15□□□□□ -0.47
CCDC88A-201ENST00000263630 METTL1Q9UBP6 276 aaKnown RBP12.15□□□□□ -0.47
CCDC88A-201ENST00000263630 BIVMQ86UB2 503 aa12.15□□□□□ -0.47
CCDC88A-201ENST00000263630 IGHV3-21A0A0B4J1V1 117 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 OTX1P32242 354 aaPredicted RBP12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 SSTR5P35346 364 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 KBTBD11-OT1A0A1B0GTJ5 212 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 PGPA6NDG6 321 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 DXOO77932 396 aaKnown RBP12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 OR51G1Q8NGK1 321 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 RHNO1Q9BSD3 238 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 NALCNQ8IZF0 1738 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 NKX2-2O95096 273 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 NAPSAO96009 420 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 SIGMAR1Q99720 223 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 NTMQ9P121 344 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 J3QT63 122 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 RPS11P62280 158 aaKnown RBP eCLIP12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 CXorf66Q5JRM2 361 aaPredicted RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms