RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 FAM216AQ8WUB2 273 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 TMEM170AQ8WVE7 144 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 PAXXQ9BUH6 204 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 LHX9Q9NQ69 397 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 TMEM106BQ9NUM4 274 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 TRBV5-7A0A0A0MS05 114 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 TRAV39A0A0B4J263 110 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 hADV38S2A0JD32 116 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 C19orf67A6NJJ6 358 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 TMEM250H0YL14 139 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 EML2O95834 649 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 KLRB1Q12918 225 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 PRSS27Q9BQR3 290 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 WFDC6Q9BQY6 131 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 CXXC4Q9H2H0 198 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 SEBOXQ9HB31 216 aaPredicted RBP9.05□□□□□ -0.96
VCL-201ENST00000211998 CCL2P13500 99 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 ACP1P24666 158 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 CEACAM3P40198 252 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 KIR2DL1P43626 348 aaPredicted RBP9.05□□□□□ -0.96
VCL-201ENST00000211998 KIR2DL2P43627 348 aaPredicted RBP9.05□□□□□ -0.96
VCL-201ENST00000211998 KCNS1Q96KK3 526 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 PRDM13Q9H4Q3 707 aa9.05□□□□□ -0.96
VCL-201ENST00000211998 C7orf71A4D174 169 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 C21orf140B9A014 251 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 H0Y980 276 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 SLC17A3O00476 420 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 CTGFP29279 349 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 UCP3P55916 312 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 RAC3P60763 192 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 TNFAIP6P98066 277 aaPredicted RBP9.04□□□□□ -0.96
VCL-201ENST00000211998 TWIST1Q15672 202 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 ADIPOQQ15848 244 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 BEND2Q8NDZ0 799 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 STXBP6Q8NFX7 210 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 OR8G5Q8NG78 346 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 SMOC1Q9H4F8 434 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 NPVFQ9HCQ7 196 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 ABCA3Q99758 1704 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 SERF1AO75920 110 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 TM4SF20Q53R12 229 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 C1orf185Q5T7R7 199 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 SELENOHQ8IZQ5 122 aaKnown RBP9.04□□□□□ -0.96
VCL-201ENST00000211998 FAM19A2Q8N3H0 131 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 CT55Q8WUE5 264 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 SNRNP40Q96DI7 357 aaKnown RBP9.04□□□□□ -0.96
VCL-201ENST00000211998 TM4SF19Q96DZ7 209 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 TMEM208Q9BTX3 173 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 SDF2L1Q9HCN8 221 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 STRCQ7RTU9 1775 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 C5orf67F2Z3F1 127 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 RAB1BQ9H0U4 201 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 HILPDAQ9Y5L2 63 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 CENPVL1A0A0U1RR11 272 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 NDUFA2O43678 99 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 LIPFP07098 398 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 ARL14EPLP0DKL9 152 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 CKS2P33552 79 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 CYP2G1PQ6ZSU1 146 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 WDR54Q9H977 334 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 NRN1Q9NPD7 142 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 ELOVL5Q9NYP7 299 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 C1QTNF9BB2RNN3 333 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 UPK3AO75631 287 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 C1orf100Q5SVJ3 147 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 LRRC29Q8WV35 223 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 NEU1Q99519 415 aa9.04□□□□□ -0.96
VCL-201ENST00000211998 PPIAL4DF5H284 164 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 ATXN7O15265 892 aaPredicted RBP9.03□□□□□ -0.96
VCL-201ENST00000211998 FGF16O43320 207 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 AMBPP02760 352 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 PSG6Q00889 435 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 GPR146Q96CH1 333 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 NRTNQ99748 197 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 BCORQ6W2J9 1755 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 OOEPA6NGQ2 149 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 MPDU1O75352 247 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 TYMSP04818 313 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 OR4A8P0C604 315 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 CEACAM1P13688 526 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 IZUMO4Q1ZYL8 232 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 RAB1CQ92928 201 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 GRAMD2BQ96HH9 432 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 RPRMQ9NS64 109 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 PPIHO43447 177 aaKnown RBP9.03□□□□□ -0.96
VCL-201ENST00000211998 CRYBB3P26998 211 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 GPR183P32249 361 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 CKS1BP61024 79 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 MIC13Q5XKP0 118 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 AMMECR1LQ6DCA0 310 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 C5orf30Q96GV9 206 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 MRPL16Q9NX20 251 aaKnown RBP9.03□□□□□ -0.96
VCL-201ENST00000211998 THYN1Q9P016 225 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 R4GN57 208 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 FAM90A27PA6NNH2 459 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 MGPP08493 103 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 LSM6P62312 80 aaKnown RBP9.03□□□□□ -0.96
VCL-201ENST00000211998 TMEM187Q14656 261 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 ZBTB34Q8NCN2 500 aa9.03□□□□□ -0.96
VCL-201ENST00000211998 OR2I1PQ8NGU4 316 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms