RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 F5H0A9 414 aaPredicted RBP8.73□□□□□ -1.01
CLN3-248ENST00000636355 HSD17B6O14756 317 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 OR8U9P0C7N5 309 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 FAM219AQ8IW50 185 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 ZNF439Q8NDP4 499 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 OR52L2PQ8NGH6 319 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 OR8U1Q8NH10 309 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 ZNF596Q8TC21 504 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 TNFRSF14Q92956 283 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 LSM10Q969L4 123 aaKnown RBP8.73□□□□□ -1.01
CLN3-248ENST00000636355 ADTRPQ96IZ2 230 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 DCTN5Q9BTE1 182 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 GON7Q9BXV9 100 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 IFI27L2Q9H2X8 130 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 BARX1Q9HBU1 254 aaPredicted RBP8.73□□□□□ -1.01
CLN3-248ENST00000636355 C19orf12Q9NSK7 152 aa8.73□□□□□ -1.01
CLN3-248ENST00000636355 hCG_1809904A0A1W2PP81 198 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 A0A1W2PPE2 198 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 A0A1W2PR64 198 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 A0A1W2PRV1 198 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 FAM25EA8MYX2 175 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 CCSO14618 274 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 ADAP1O75689 374 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 SIX6O95475 246 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 MPC2O95563 127 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 LYL1P12980 280 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 COX6B1P14854 86 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 COL8A2P25067 703 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 PSMB6P28072 239 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 GPR12P47775 334 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 NKX2-5P52952 324 aaPredicted RBP8.72□□□□□ -1.01
CLN3-248ENST00000636355 IL15RAQ13261 267 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 IAH1Q2TAA2 248 aaPredicted RBP8.72□□□□□ -1.01
CLN3-248ENST00000636355 NMSQ5H8A3 153 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 TMEM268Q5VZI3 342 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 GGNBP1Q5YKI7 109 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 C11orf87Q6NUJ2 197 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 SLC25A48Q6ZT89 311 aaKnown RBP8.72□□□□□ -1.01
CLN3-248ENST00000636355 ZNF695Q8IW36 515 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 LINC00311Q8N616 119 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 SLC35G3Q8N808 338 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 OR11H4Q8NGC9 324 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 THAP6Q8TBB0 222 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 PARP12Q9H0J9 701 aaKnown RBP8.72□□□□□ -1.01
CLN3-248ENST00000636355 CACFD1Q9UGQ2 172 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 PSG11Q9UQ72 335 aa8.72□□□□□ -1.01
CLN3-248ENST00000636355 NAV2Q8IVL1 2488 aa8.71□□□□□ -1.01
CLN3-248ENST00000636355 TRAV14DV4A0A0A6YYC5 116 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 A0A0D9SG52 128 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 C17orf98A8MV24 154 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 SMLR1H3BR10 107 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 NDUFS8O00217 210 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 RGS13O14921 159 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 RAB29O14966 203 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 PPIHO43447 177 aaKnown RBP8.71□□□□□ -1.02
CLN3-248ENST00000636355 FCN3O75636 299 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 OR2F2O95006 317 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 HOXB5P09067 269 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 PAX1P15863 534 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 ARHGDIBP52566 201 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 ZNF137PP52743 207 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 DLX6P56179 175 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 TAGLNQ01995 201 aaKnown RBP8.71□□□□□ -1.02
CLN3-248ENST00000636355 OR2F1Q13607 317 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 ZNF273Q14593 569 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 TMEM200BQ69YZ2 307 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 THOC7Q6I9Y2 204 aaKnown RBP8.71□□□□□ -1.02
CLN3-248ENST00000636355 PRSS54Q6PEW0 395 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 LYPD2Q6UXB3 125 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 ZNF841Q6ZN19 808 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 KIR3DL3Q8N743 410 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 ZBTB8BQ8NAP8 495 aaPredicted RBP8.71□□□□□ -1.02
CLN3-248ENST00000636355 OR51H1Q8NH63 302 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 RFESDQ8TAC1 157 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 UBALD1Q8TB05 177 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 H1FXQ92522 213 aaKnown RBP8.71□□□□□ -1.02
CLN3-248ENST00000636355 CCL19Q99731 98 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 SLA2Q9H6Q3 261 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 PATZ1Q9HBE1 687 aaKnown RBP8.71□□□□□ -1.02
CLN3-248ENST00000636355 SDHAF2Q9NX18 166 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 COA4Q9NYJ1 87 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 TNFSF18Q9UNG2 199 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 HSPB11Q9Y547 144 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 MALRD1Q5VYJ5 2156 aa8.71□□□□□ -1.02
CLN3-248ENST00000636355 COL12A1Q99715 3063 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 FXYD6-FXYD2A0A087WZ82 144 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 IGHV3-43A0A0B4J1X8 118 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 A0A1B0GU03 582 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 C13orf42A0A1B0GVH6 325 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 FAM90A9PA6NNJ1 464 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 A8MXK9 166 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 CLDN1O95832 211 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 RNF224P0DH78 156 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 IGHV3-43DP0DP04 118 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 GPR6P46095 362 aaPredicted RBP8.7□□□□□ -1.02
CLN3-248ENST00000636355 SMCO1Q147U7 214 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 SP6Q3SY56 376 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 WDR25Q64LD2 544 aaPredicted RBP8.7□□□□□ -1.02
CLN3-248ENST00000636355 LAMTOR1Q6IAA8 161 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 DHRS7BQ6IAN0 325 aaPredicted RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms