RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 SDF2L1Q9HCN8 221 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 hCG_38984A0A1B0GV85 526 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 FFAR1O14842 300 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 IGHV4-39P01824 125 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 CLEC2LP0C7M8 214 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 DAOP14920 347 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 PSMB5P28074 263 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 GPNMBQ14956 572 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 ACSF3Q4G176 576 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-212ENST00000636194 SPATA45Q537H7 98 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 ZDHHC24Q6UX98 284 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 HOGA1Q86XE5 327 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 CMC2Q9NRP2 79 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 KIAA1549Q9HCM3 1950 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 PGPEP1LA6NFU8 196 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 TOMM40O96008 361 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 PAX1P15863 534 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 RPL31P62899 125 aaKnown RBP5.3□□□□□ -1.56
SCN1A-212ENST00000636194 MRM1Q6IN84 353 aaKnown RBP5.3□□□□□ -1.56
SCN1A-212ENST00000636194 EAF1Q96JC9 268 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-212ENST00000636194 DNAJC30Q96LL9 226 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 UBE2E2Q96LR5 201 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 OR51B2Q9Y5P1 312 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 CTDSPLO15194 276 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 PAGE4O60829 102 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 ATP5LO75964 103 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 LEPROTL1O95214 131 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 TMEM50AO95807 157 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 HIST1H1DP16402 221 aaKnown RBP5.3□□□□□ -1.56
SCN1A-212ENST00000636194 OR4D5Q8NGN0 318 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 HMGCLL1Q8TB92 370 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 FOXB1Q99853 325 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 CHODLQ9H9P2 273 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 IL17CQ9P0M4 197 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 FZR1Q9UM11 496 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 COL16A1Q07092 1604 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-212ENST00000636194 IGLV3-22A0A075B6J6 115 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 A0A1B0GWB2 263 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 C19orf67A6NJJ6 358 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 MYOD1P15172 320 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 EFNB2P52799 333 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 MFAP2P55001 183 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 SCAND1P57086 179 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 RNASEH2CQ8TDP1 164 aaKnown RBP5.3□□□□□ -1.56
SCN1A-212ENST00000636194 BAALCQ8WXS3 180 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 FGF14Q92915 247 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 ZNF385AQ96PM9 386 aaKnown RBP5.3□□□□□ -1.56
SCN1A-212ENST00000636194 SSBP4Q9BWG4 385 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-212ENST00000636194 RBPJLQ9UBG7 517 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 NEURL4Q96JN8 1562 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 PSME4Q14997 1843 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 IGHV3-15A0A0B4J1V0 119 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 DPRXA6NFQ7 191 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 CXCL13O43927 109 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 PITX3O75364 302 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 CA11O75493 328 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 FCN3O75636 299 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 LEPP41159 167 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 TMEM255AQ5JRV8 349 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 ANKRD37Q7Z713 158 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 LRRC61Q9BV99 259 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 SFXN3Q9BWM7 321 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 CBLN4Q9NTU7 201 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 PEF1Q9UBV8 284 aaKnown RBP5.3□□□□□ -1.56
SCN1A-212ENST00000636194 KCNK7Q9Y2U2 307 aa5.3□□□□□ -1.56
SCN1A-212ENST00000636194 C16orf97H3BN30 126 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 CD3DP04234 171 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 PRR35P0CG20 571 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 GCAP28676 217 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 KISS1Q15726 138 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 OR10J3Q5JRS4 329 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 SPEM1Q8N4L4 309 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 DUX3Q96PT4 197 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 KLF16Q9BXK1 252 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-212ENST00000636194 MTCH2Q9Y6C9 303 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 HELZP42694 1942 aaKnown RBP5.29□□□□□ -1.56
SCN1A-212ENST00000636194 WNK3Q9BYP7 1800 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 TRBV9A0A0B4J1U6 114 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 ASPDHA6ND91 283 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 LMO7DNF2Z398 122 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 GAPDHP04406 335 aaKnown RBP5.29□□□□□ -1.56
SCN1A-212ENST00000636194 DYNLT3P51808 116 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 ATP5J2P56134 94 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 C10orf111Q8N326 155 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 OR10D3Q8NH80 312 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 ZBP1Q9H171 429 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 RNF7Q9UBF6 113 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 C21orf140B9A014 251 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 CTSDP07339 412 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-212ENST00000636194 CGB7P0DN87 165 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 DCTDP32321 178 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 NTHL1P78549 312 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 MRPL54Q6P161 138 aaKnown RBP5.29□□□□□ -1.56
SCN1A-212ENST00000636194 Q7L0L9 218 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 OR9G4Q8NGQ1 327 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 INSM2Q96T92 566 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-212ENST00000636194 BRCA1P38398 1863 aaKnown RBP5.29□□□□□ -1.56
SCN1A-212ENST00000636194 DSCAMO60469 2012 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 A0A1W2PNR3 127 aa5.29□□□□□ -1.56
SCN1A-212ENST00000636194 MBLAC1A4D2B0 266 aaPredicted RBP5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms