RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 LYSTQ99698 3801 aa19.23■□□□□ 0.67
PTPRF-216ENST00000617451 IGHV4OR15-8A0A075B7B6 117 aa19.23■□□□□ 0.67
PTPRF-216ENST00000617451 A0A087WW49 117 aa19.23■□□□□ 0.67
PTPRF-216ENST00000617451 RRHO14718 337 aa19.23■□□□□ 0.67
PTPRF-216ENST00000617451 EGR2P11161 476 aaPredicted RBP19.23■□□□□ 0.67
PTPRF-216ENST00000617451 TTC23Q5W5X9 447 aa19.23■□□□□ 0.67
PTPRF-216ENST00000617451 SETD9Q8NE22 299 aa19.23■□□□□ 0.67
PTPRF-216ENST00000617451 FAAP24Q9BTP7 215 aa19.23■□□□□ 0.67
PTPRF-216ENST00000617451 GHITMQ9H3K2 345 aa19.23■□□□□ 0.67
PTPRF-216ENST00000617451 ABRACLQ9P1F3 81 aa19.23■□□□□ 0.67
PTPRF-216ENST00000617451 EFCAB10A6NFE3 127 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 FCN1O00602 326 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 RAB29O14966 203 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 ST8SIA5O15466 376 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 UBBP0CG47 229 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 CT45A6P0DMU7 189 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 CT45A5P0DMU8 189 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 CT45A7P0DMV0 189 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 CD200R1LQ6Q8B3 271 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 OR6Q1Q8NGQ2 317 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 IL1F10Q8WWZ1 152 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 ARPC1AQ92747 370 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 THRSPQ92748 146 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 SLC23A1Q9UHI7 598 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 A3GALT2U3KPV4 340 aa19.22■□□□□ 0.67
PTPRF-216ENST00000617451 OR5H14A6NHG9 310 aa19.21■□□□□ 0.67
PTPRF-216ENST00000617451 OR8U9P0C7N5 309 aa19.21■□□□□ 0.67
PTPRF-216ENST00000617451 MAPK3P27361 379 aaPredicted RBP19.21■□□□□ 0.67
PTPRF-216ENST00000617451 TMEM267Q0VDI3 215 aaPredicted RBP19.21■□□□□ 0.67
PTPRF-216ENST00000617451 RPL39P5Q59GN2 51 aa19.21■□□□□ 0.67
PTPRF-216ENST00000617451 OR10K2Q6IF99 312 aa19.21■□□□□ 0.67
PTPRF-216ENST00000617451 C6orf201Q7Z4U5 140 aa19.21■□□□□ 0.67
PTPRF-216ENST00000617451 CSMD3Q7Z407 3707 aa19.2■□□□□ 0.66
PTPRF-216ENST00000617451 TRIM64CA6NLI5 447 aa19.2■□□□□ 0.66
PTPRF-216ENST00000617451 NAPSAO96009 420 aa19.2■□□□□ 0.66
PTPRF-216ENST00000617451 MC5RP33032 325 aa19.2■□□□□ 0.66
PTPRF-216ENST00000617451 WNT4P56705 351 aa19.2■□□□□ 0.66
PTPRF-216ENST00000617451 RPS27AP62979 156 aaKnown RBP19.2■□□□□ 0.66
PTPRF-216ENST00000617451 PLGLAQ15195 96 aa19.2■□□□□ 0.66
PTPRF-216ENST00000617451 PYHIN1Q6K0P9 492 aa19.2■□□□□ 0.66
PTPRF-216ENST00000617451 ZNF880Q6PDB4 577 aa19.2■□□□□ 0.66
PTPRF-216ENST00000617451 SVOPQ8N4V2 548 aa19.2■□□□□ 0.66
PTPRF-216ENST00000617451 ZMAT4Q9H898 229 aa19.2■□□□□ 0.66
PTPRF-216ENST00000617451 CNOT2Q9NZN8 540 aaKnown RBP19.2■□□□□ 0.66
PTPRF-216ENST00000617451 H0YJW9 148 aa19.19■□□□□ 0.66
PTPRF-216ENST00000617451 HSPB1P04792 205 aaKnown RBP19.19■□□□□ 0.66
PTPRF-216ENST00000617451 HTR2CP28335 458 aa19.19■□□□□ 0.66
PTPRF-216ENST00000617451 AKIRIN2Q53H80 203 aa19.19■□□□□ 0.66
PTPRF-216ENST00000617451 ACTBL2Q562R1 376 aa19.19■□□□□ 0.66
PTPRF-216ENST00000617451 GLDNQ6ZMI3 551 aaPredicted RBP19.19■□□□□ 0.66
PTPRF-216ENST00000617451 PPP1R27Q86WC6 154 aa19.19■□□□□ 0.66
PTPRF-216ENST00000617451 ABHD5Q8WTS1 349 aa19.19■□□□□ 0.66
PTPRF-216ENST00000617451 PARP12Q9H0J9 701 aaKnown RBP19.19■□□□□ 0.66
PTPRF-216ENST00000617451 RNF150Q9ULK6 438 aa19.19■□□□□ 0.66
PTPRF-216ENST00000617451 GAB2Q9UQC2 676 aa19.19■□□□□ 0.66
PTPRF-216ENST00000617451 STARD9Q9P2P6 4700 aa19.19■□□□□ 0.66
PTPRF-216ENST00000617451 RBBP9O75884 186 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 IGHV3-11P01762 117 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 GSTP1P09211 210 aaKnown RBP19.18■□□□□ 0.66
PTPRF-216ENST00000617451 LYL1P12980 280 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 PITPNAQ00169 270 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 INSL4Q14641 139 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 C1orf100Q5SVJ3 147 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 LAIR2Q6ISS4 152 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 OR5AN1Q8NGI8 311 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 FLYWCH2Q96CP2 140 aaKnown RBP19.18■□□□□ 0.66
PTPRF-216ENST00000617451 RNF5Q99942 180 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 AGMATQ9BSE5 352 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 TMEM59Q9BXS4 323 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 PSORS1C1Q9UIG5 152 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 WASHC3Q9Y3C0 194 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 DNAH1Q9P2D7 4330 aa19.18■□□□□ 0.66
PTPRF-216ENST00000617451 H7C2Y5 167 aa19.17■□□□□ 0.66
PTPRF-216ENST00000617451 ITGB1BP1O14713 200 aa19.17■□□□□ 0.66
PTPRF-216ENST00000617451 MYL12BO14950 172 aa19.17■□□□□ 0.66
PTPRF-216ENST00000617451 UNQ5815/PRO19632Q6UWF5 114 aa19.17■□□□□ 0.66
PTPRF-216ENST00000617451 LRRTM1Q86UE6 522 aa19.17■□□□□ 0.66
PTPRF-216ENST00000617451 DHRSXQ8N5I4 330 aa19.17■□□□□ 0.66
PTPRF-216ENST00000617451 ABHD14BQ96IU4 210 aa19.17■□□□□ 0.66
PTPRF-216ENST00000617451 RHOVQ96L33 236 aa19.17■□□□□ 0.66
PTPRF-216ENST00000617451 OR4C12Q96R67 309 aa19.17■□□□□ 0.66
PTPRF-216ENST00000617451 FAM103A1Q9BTL3 118 aaKnown RBP19.17■□□□□ 0.66
PTPRF-216ENST00000617451 TM2D1Q9BX74 207 aa19.17■□□□□ 0.66
PTPRF-216ENST00000617451 CHMP1AQ9HD42 196 aaPredicted RBP19.17■□□□□ 0.66
PTPRF-216ENST00000617451 UNC119Q13432 240 aa19.16■□□□□ 0.66
PTPRF-216ENST00000617451 ACSM3Q53FZ2 586 aa19.16■□□□□ 0.66
PTPRF-216ENST00000617451 ZNF562Q6V9R5 426 aa19.16■□□□□ 0.66
PTPRF-216ENST00000617451 MOB1BQ7L9L4 216 aa19.16■□□□□ 0.66
PTPRF-216ENST00000617451 NANOGP1Q8N7R0 232 aa19.16■□□□□ 0.66
PTPRF-216ENST00000617451 LFNGQ8NES3 379 aa19.16■□□□□ 0.66
PTPRF-216ENST00000617451 KCNG3Q8TAE7 436 aa19.16■□□□□ 0.66
PTPRF-216ENST00000617451 MS4A10Q96PG2 267 aa19.16■□□□□ 0.66
PTPRF-216ENST00000617451 CITED4Q96RK1 184 aa19.16■□□□□ 0.66
PTPRF-216ENST00000617451 NICN1Q9BSH3 213 aa19.16■□□□□ 0.66
PTPRF-216ENST00000617451 ARPC1BO15143 372 aaKnown RBP19.15■□□□□ 0.66
PTPRF-216ENST00000617451 TPPP2P59282 170 aa19.15■□□□□ 0.66
PTPRF-216ENST00000617451 SRSF7Q16629 238 aaKnown RBP eCLIP19.15■□□□□ 0.665e-7■■■□□ 16.8
PTPRF-216ENST00000617451 GLT8D1Q68CQ7 371 aa19.15■□□□□ 0.66
PTPRF-216ENST00000617451 AHSA2Q719I0 299 aa19.15■□□□□ 0.66
PTPRF-216ENST00000617451 PACRGLQ8N7B6 248 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms