RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TMEM69Q5SWH9 247 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 C10orf99Q6UWK7 81 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 C11orf44Q8N8P7 122 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 C8orf31Q8N9H6 132 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 LINC01548A6NM66 108 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 OR8U9P0C7N5 309 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 ZBTB25P24278 435 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 CEACAM3P40198 252 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 ABCA11PQ4W5N1 156 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 TGIF2LXQ8IUE1 241 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 CROCCP3Q8IVE0 287 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 OR4A4PQ8NGN8 299 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 OR8U1Q8NH10 309 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 S100A16Q96FQ6 103 aaKnown RBP10.75□□□□□ -0.69
LINC00540-202ENST00000616974 SLC25A33Q9BSK2 321 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 SLIRPQ9GZT3 109 aaKnown RBP10.75□□□□□ -0.69
LINC00540-202ENST00000616974 AMMECR1Q9Y4X0 333 aaPredicted RBP10.75□□□□□ -0.69
LINC00540-202ENST00000616974 CRYBA1P05813 215 aa10.74□□□□□ -0.69
LINC00540-202ENST00000616974 CT45A6P0DMU7 189 aa10.74□□□□□ -0.69
LINC00540-202ENST00000616974 CT45A5P0DMU8 189 aa10.74□□□□□ -0.69
LINC00540-202ENST00000616974 CT45A7P0DMV0 189 aa10.74□□□□□ -0.69
LINC00540-202ENST00000616974 COMPP49747 757 aaPredicted RBP10.74□□□□□ -0.69
LINC00540-202ENST00000616974 ZNF833PQ6ZTB9 187 aa10.74□□□□□ -0.69
LINC00540-202ENST00000616974 PHF21AQ96BD5 680 aa10.74□□□□□ -0.69
LINC00540-202ENST00000616974 KCTD12Q96CX2 325 aaKnown RBP10.74□□□□□ -0.69
LINC00540-202ENST00000616974 EAF1Q96JC9 268 aaPredicted RBP10.74□□□□□ -0.69
LINC00540-202ENST00000616974 NABP2Q9BQ15 211 aa10.74□□□□□ -0.69
LINC00540-202ENST00000616974 DIABLOQ9NR28 239 aa10.74□□□□□ -0.69
LINC00540-202ENST00000616974 CCDC160A6NGH7 325 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 GAPDHP04406 335 aaKnown RBP10.73□□□□□ -0.69
LINC00540-202ENST00000616974 DTYMKP23919 212 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 LSAMPQ13449 338 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 STEAP3Q658P3 488 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 BEST4Q8NFU0 473 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 SPATA3Q8NHX4 192 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 OR2D2Q9H210 308 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 ANXA10Q9UJ72 324 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 LINC00527Q9UJ94 153 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 TSPAN9O75954 239 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 IGLV2-14P01704 120 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 APOA1P02647 267 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 RFX2P48378 723 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 PROK1P58294 105 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 PNLIPRP3Q17RR3 467 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 C12orf54Q6X4T0 127 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 Q6ZS49 121 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 H1FOOQ8IZA3 346 aaPredicted RBP10.73□□□□□ -0.69
LINC00540-202ENST00000616974 OR10J5Q8NHC4 309 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 RBM14Q96PK6 669 aaKnown RBP10.73□□□□□ -0.69
LINC00540-202ENST00000616974 ABHD1Q96SE0 405 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 PLSCR3Q9NRY6 295 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 SERTAD4Q9NUC0 356 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 RNF114Q9Y508 228 aa10.73□□□□□ -0.69
LINC00540-202ENST00000616974 PEX14O75381 377 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 LPLP06858 475 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 MNDAP41218 407 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 KIR2DS4P43632 304 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 RAB7AP51149 207 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 KIR2DS1Q14954 304 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 Q3ZCU0 254 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 FAM131AQ6UXB0 335 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 Q8N6K4 173 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 WFDC12Q8WWY7 111 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 EXTL2Q9UBQ6 330 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 TET2Q6N021 2002 aaPredicted RBP10.72□□□□□ -0.69
LINC00540-202ENST00000616974 FAM25AB3EWG3 89 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 FAM25CB3EWG5 89 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 FAM25GB3EWG6 89 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 RGS5O15539 181 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 NDUFA7O95182 113 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 IGKV1-16P04430 117 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 TMEM11P17152 192 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 BRS3P32247 399 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 FOXL1Q12952 345 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 CNIH2Q6PI25 160 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 HOGA1Q86XE5 327 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 LYSMD2Q8IV50 215 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 OR8H3Q8N146 312 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 ZNF383Q8NA42 475 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 GINS4Q9BRT9 223 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 C6orf62Q9GZU0 229 aaPredicted RBP10.72□□□□□ -0.69
LINC00540-202ENST00000616974 SDHAF2Q9NX18 166 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 KLK11Q9UBX7 282 aa10.72□□□□□ -0.69
LINC00540-202ENST00000616974 CLPSL1A2RUU4 121 aa10.71□□□□□ -0.69
LINC00540-202ENST00000616974 DPPA5A6NC42 116 aa10.71□□□□□ -0.69
LINC00540-202ENST00000616974 OOSP1A8MZH6 123 aa10.71□□□□□ -0.69
LINC00540-202ENST00000616974 LANCL1O43813 399 aa10.71□□□□□ -0.69
LINC00540-202ENST00000616974 OR2F2O95006 317 aa10.71□□□□□ -0.69
LINC00540-202ENST00000616974 HLA-DMAP28067 261 aa10.71□□□□□ -0.69
LINC00540-202ENST00000616974 CCDC144NLQ6NUI1 221 aa10.71□□□□□ -0.69
LINC00540-202ENST00000616974 TOLLIPQ9H0E2 274 aa10.71□□□□□ -0.69
LINC00540-202ENST00000616974 A0A0A6YYH2 397 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 A6NJ64 397 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 LINC00473A8K010 186 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 SCGNO76038 276 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 RGS11O94810 467 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 PMP2P02689 132 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 EBI3Q14213 229 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 TMEM30BQ3MIR4 351 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 C9orf152Q5JTZ5 239 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms