RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SRRQ9GZT4 340 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 NAA50Q9GZZ1 169 aaKnown RBP3.19□□□□□ -1.9
LINC00540-201ENST00000611481 SLC38A1Q9H2H9 487 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 VCX3BQ9H321 246 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 ARMC7Q9H6L4 198 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 METTL8Q9H825 291 aaKnown RBP3.19□□□□□ -1.9
LINC00540-201ENST00000611481 IL1RAPQ9NPH3 570 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 MIEF1Q9NQG6 463 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 EXOSC3Q9NQT5 275 aaKnown RBP3.19□□□□□ -1.9
LINC00540-201ENST00000611481 LGALS13Q9UHV8 139 aa3.19□□□□□ -1.9
LINC00540-201ENST00000611481 RCL1Q9Y2P8 373 aaKnown RBP3.19□□□□□ -1.9
LINC00540-201ENST00000611481 MRPS28Q9Y2Q9 187 aaKnown RBP3.19□□□□□ -1.9
LINC00540-201ENST00000611481 F5H5P2 479 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 H3BSA7 217 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 MRPS12O15235 138 aaKnown RBP3.18□□□□□ -1.9
LINC00540-201ENST00000611481 ATP5HO75947 161 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 FGGP02679 453 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 HSD17B1P14061 328 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 PGAM1P18669 254 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 BCL3P20749 454 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 COX7A1P24310 79 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 ASIPP42127 132 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 CDC34P49427 236 aaPredicted RBP3.18□□□□□ -1.9
LINC00540-201ENST00000611481 GDI2P50395 445 aaKnown RBP3.18□□□□□ -1.9
LINC00540-201ENST00000611481 ERFP50548 548 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 MFAP2P55001 183 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 PAX9P55771 341 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 ATP6V0D1P61421 351 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 VSNL1P62760 191 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 MYL5Q02045 173 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 ZNF45Q02386 682 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 C2orf80Q0P641 193 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 BNIP2Q12982 314 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 IL18R1Q13478 541 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 SLC36A2Q495M3 483 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 FAM219BQ5XKK7 198 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 HOGA1Q86XE5 327 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 SLC22A24Q8N4F4 322 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 FAM71E2Q8N5Q1 922 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 ZNRF1Q8ND25 227 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 RFESDQ8TAC1 157 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 FANK1Q8TC84 345 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 BAALCQ8WXS3 180 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 H1FXQ92522 213 aaKnown RBP3.18□□□□□ -1.9
LINC00540-201ENST00000611481 C11orf52Q96A22 123 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 NABP1Q96AH0 204 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 RPEQ96AT9 228 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 CMBLQ96DG6 245 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 CENPNQ96H22 339 aaPredicted RBP3.18□□□□□ -1.9
LINC00540-201ENST00000611481 ZNF486Q96H40 463 aaPredicted RBP3.18□□□□□ -1.9
LINC00540-201ENST00000611481 NOL4LQ96MY1 436 aaPredicted RBP3.18□□□□□ -1.9
LINC00540-201ENST00000611481 OR8B4Q96RC9 309 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 DGCR6LQ9BY27 220 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 SP140LQ9H930 580 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 KCNE3Q9Y6H6 103 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 AGRNO00468 2067 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 FSIP2Q5CZC0 6907 aa3.18□□□□□ -1.9
LINC00540-201ENST00000611481 VPS13BQ7Z7G8 4022 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 IGHV3OR15-7A0A075B7D8 119 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 TRAV38-1A0A0B4J264 116 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 FABP12A6NFH5 140 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 C15orf61A6NNL5 157 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 H3BN98 237 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 SMLR1H3BR10 107 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 K7EQD1 137 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 M0R1W7 72 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 NDUFA2O43678 99 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 TRMUO75648 421 aaKnown RBP3.17□□□□□ -1.9
LINC00540-201ENST00000611481 PDYNP01213 254 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 HBE1P02100 147 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 IFI6P09912 130 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 CXCR1P25024 350 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 GSK3BP49841 420 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 ELF3P78545 371 aaPredicted RBP3.17□□□□□ -1.9
LINC00540-201ENST00000611481 PITPNAQ00169 270 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 ECH1Q13011 328 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 KIAA0141Q14154 515 aaPredicted RBP3.17□□□□□ -1.9
LINC00540-201ENST00000611481 ATP6V1FQ16864 119 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 C5orf64Q2M2E5 130 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 PABPC1L2AQ5JQF8 200 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 CLEC12AQ5QGZ9 265 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 HHATQ5VTY9 493 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 OLIG3Q7RTU3 272 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 TRPT1Q86TN4 253 aaKnown RBP3.17□□□□□ -1.9
LINC00540-201ENST00000611481 SLC30A8Q8IWU4 369 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 C10orf111Q8N326 155 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 LRRC18Q8N456 261 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 OR11H1Q8NG94 326 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 OR4K5Q8NGD3 323 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 OR6K6Q8NGW6 343 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 DCUN1D4Q92564 292 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 RAB3CQ96E17 227 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 MS4A14Q96JA4 679 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 POM121L2Q96KW2 1035 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 C9orf85Q96MD7 179 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 STACQ99469 402 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 SORT1Q99523 831 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 CAB39LQ9H9S4 337 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 TMEM38BQ9NVV0 291 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 MCUBQ9NWR8 336 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms