RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 BDKRB2P30411 391 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 F2RL1P55085 397 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 GNB1P62873 340 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 KIAA0141Q14154 515 aaPredicted RBP4.86□□□□□ -1.63
CUX1-220ENST00000607092 SRSF7Q16629 238 aaKnown RBP eCLIP4.86□□□□□ -1.631e-8■■■■■ 28.4
CUX1-220ENST00000607092 ZIK1Q3SY52 487 aaPredicted RBP4.86□□□□□ -1.63
CUX1-220ENST00000607092 ANKRD39Q53RE8 183 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 ACTBL2Q562R1 376 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 CT45A1Q5HYN5 189 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 FAM209BQ5JX69 171 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 SYT6Q5T7P8 510 aaPredicted RBP4.86□□□□□ -1.63
CUX1-220ENST00000607092 DDI2Q5TDH0 399 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 ZFAND6Q6FIF0 208 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 LCN12Q6JVE5 192 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 RPL22L1Q6P5R6 122 aaKnown RBP4.86□□□□□ -1.63
CUX1-220ENST00000607092 TMPRSS11AQ6ZMR5 421 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 CDH26Q8IXH8 852 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 GAPTQ8N292 157 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 ZNF439Q8NDP4 499 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 BVESQ8NE79 360 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 OR2K2Q8NGT1 345 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 OR10AC1Q8NH08 325 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 CT45A3Q8NHU0 189 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 ABHD5Q8WTS1 349 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 ARPC1AQ92747 370 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 DLX4Q92988 240 aaPredicted RBP4.86□□□□□ -1.63
CUX1-220ENST00000607092 TMEM106AQ96A25 262 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 GALMQ96C23 342 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 TMEM68Q96MH6 324 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 OR5B12Q96R08 314 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 MRPL18Q9H0U6 180 aaKnown RBP4.86□□□□□ -1.63
CUX1-220ENST00000607092 KLK15Q9H2R5 256 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 DUSP21Q9H596 190 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 OR2S2Q9NQN1 319 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 PLCXD1Q9NUJ7 323 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 C19orf73Q9NVV2 129 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 SCN3BQ9NY72 215 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 PIPOXQ9P0Z9 390 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 ABRACLQ9P1F3 81 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 RCC2Q9P258 522 aaKnown RBP4.86□□□□□ -1.63
CUX1-220ENST00000607092 TPRKBQ9Y3C4 175 aa4.86□□□□□ -1.63
CUX1-220ENST00000607092 STARD9Q9P2P6 4700 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 IGHV3-43A0A0B4J1X8 118 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 C13orf42A0A1B0GVH6 325 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 A0A1W2PN81 502 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 G3V318 75 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 RAB29O14966 203 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 SLC22A1O15245 554 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 AIREO43918 545 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 YPEL1O60688 119 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 GPX5O75715 221 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 CDRT1O95170 752 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 SPDEFO95238 335 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 IGHV3-43DP0DP04 118 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 SERPINA2P20848 420 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 FUT3P21217 361 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 CHRNA7P36544 502 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 RANBP1P43487 201 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 TPPP2P59282 170 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 SUMO1P63165 101 aaKnown RBP4.85□□□□□ -1.63
CUX1-220ENST00000607092 CX3CL1P78423 397 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 ECSCRQ19T08 205 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 MORN2Q502X0 79 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 UTF1Q5T230 341 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 LCE2CQ5TA81 110 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 ASPHD1Q5U4P2 390 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 RAB12Q6IQ22 244 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 ZNF773Q6PK81 442 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 ZNF562Q6V9R5 426 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 LAX1Q8IWV1 398 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 Q8N402 240 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 PRR18Q8N4B5 295 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 OR10K1Q8NGX5 313 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 RHOXF1Q8NHV9 184 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 CCDC107Q8WV48 283 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 LGALS12Q96DT0 336 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 YPEL2Q96QA6 119 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 TSNAXQ99598 290 aaKnown RBP4.85□□□□□ -1.63
CUX1-220ENST00000607092 TAF9BQ9HBM6 251 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 ERVK13-1Q9NX77 482 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 SIGLEC8Q9NYZ4 499 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 GHRLQ9UBU3 117 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 MGAT4AQ9UM21 535 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 RPL36Q9Y3U8 105 aaKnown RBP4.85□□□□□ -1.63
CUX1-220ENST00000607092 PEX16Q9Y5Y5 336 aa4.85□□□□□ -1.63
CUX1-220ENST00000607092 A0A0B4J203 849 aa4.84□□□□□ -1.63
CUX1-220ENST00000607092 TRAV39A0A0B4J263 110 aa4.84□□□□□ -1.63
CUX1-220ENST00000607092 ZNF736B4DX44 427 aaPredicted RBP4.84□□□□□ -1.63
CUX1-220ENST00000607092 F8W735 103 aaPredicted RBP4.84□□□□□ -1.63
CUX1-220ENST00000607092 ITGB1BP1O14713 200 aa4.84□□□□□ -1.63
CUX1-220ENST00000607092 RRHO14718 337 aa4.84□□□□□ -1.63
CUX1-220ENST00000607092 SC5DO75845 299 aa4.84□□□□□ -1.63
CUX1-220ENST00000607092 BRI3O95415 125 aa4.84□□□□□ -1.63
CUX1-220ENST00000607092 UBBP0CG47 229 aa4.84□□□□□ -1.63
CUX1-220ENST00000607092 POLR2IP36954 125 aaKnown RBP4.84□□□□□ -1.63
CUX1-220ENST00000607092 MAP2K4P45985 399 aa4.84□□□□□ -1.63
CUX1-220ENST00000607092 SLURP1P55000 103 aa4.84□□□□□ -1.63
CUX1-220ENST00000607092 HAGHQ16775 308 aa4.84□□□□□ -1.63
CUX1-220ENST00000607092 SLC22A6Q4U2R8 563 aa4.84□□□□□ -1.63
CUX1-220ENST00000607092 CDPF1Q6NVV7 123 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms