RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 C11orf54Q9H0W9 315 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-215ENST00000601150 GHITMQ9H3K2 345 aa13.42□□□□□ -0.26
TRIM28-215ENST00000601150 A0A0A6YYH2 397 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 TMEM235A6NFC5 223 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 A6NJ64 397 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 SH2D7A6NKC9 451 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-215ENST00000601150 ZNF736B4DX44 427 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-215ENST00000601150 DIRAS3O95661 229 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 GSTT2P0CG29 244 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 GSTT2BP0CG30 244 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 VBP1P61758 197 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 LSAMPQ13449 338 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 TMEM95Q3KNT9 176 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 ZNF260Q3ZCT1 412 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 IGSF11Q5DX21 431 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 C9orf152Q5JTZ5 239 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 PRR31Q5SQ13 230 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 Q8N6K4 173 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 C5orf56Q8N8D9 126 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 S1PR3Q99500 378 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 NABP2Q9BQ15 211 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 CABLES2Q9BTV7 478 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 MRPL20Q9BYC9 149 aaKnown RBP13.41□□□□□ -0.26
TRIM28-215ENST00000601150 WNT10AQ9GZT5 417 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 FBN3Q75N90 2809 aa13.41□□□□□ -0.26
TRIM28-215ENST00000601150 TRAV18A0A075B6X5 111 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 BET1O15155 118 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 GNG2P59768 71 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 ANKRD13BQ86YJ7 626 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 OR8H1Q8NGG4 311 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 OR10J5Q8NHC4 309 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 NUDCD2Q8WVJ2 157 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 SLC25A46Q96AG3 418 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 ABHD14BQ96IU4 210 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 ZNF251Q9BRH9 671 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 AGMATQ9BSE5 352 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 DCSTAMPQ9H295 470 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 DIABLOQ9NR28 239 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 RDH8Q9NYR8 311 aa13.4□□□□□ -0.26
TRIM28-215ENST00000601150 TRBV6-7A0A0A0MS04 114 aa13.39□□□□□ -0.27
TRIM28-215ENST00000601150 NCBP2LA6PVI3 153 aaKnown RBP13.39□□□□□ -0.27
TRIM28-215ENST00000601150 M0QZ24 198 aa13.39□□□□□ -0.27
TRIM28-215ENST00000601150 ALDH3B2P48448 385 aa13.39□□□□□ -0.27
TRIM28-215ENST00000601150 RPL39P5Q59GN2 51 aa13.39□□□□□ -0.27
TRIM28-215ENST00000601150 KCTD12Q96CX2 325 aaKnown RBP13.39□□□□□ -0.27
TRIM28-215ENST00000601150 ST6GALNAC5Q9BVH7 336 aa13.39□□□□□ -0.27
TRIM28-215ENST00000601150 TOLLIPQ9H0E2 274 aa13.39□□□□□ -0.27
TRIM28-215ENST00000601150 ABCG5Q9H222 651 aa13.39□□□□□ -0.27
TRIM28-215ENST00000601150 ZNF221Q9UK13 617 aa13.39□□□□□ -0.27
TRIM28-215ENST00000601150 SSX5O60225 188 aa13.38□□□□□ -0.27
TRIM28-215ENST00000601150 FBXO24O75426 580 aa13.38□□□□□ -0.27
TRIM28-215ENST00000601150 GABARAPO95166 117 aa13.38□□□□□ -0.27
TRIM28-215ENST00000601150 TFAP2AP05549 437 aa13.38□□□□□ -0.27
TRIM28-215ENST00000601150 UBE2NLQ5JXB2 153 aa13.38□□□□□ -0.27
TRIM28-215ENST00000601150 GPR107Q5VW38 600 aa13.38□□□□□ -0.27
TRIM28-215ENST00000601150 GPR141Q7Z602 305 aa13.38□□□□□ -0.27
TRIM28-215ENST00000601150 C11orf44Q8N8P7 122 aa13.38□□□□□ -0.27
TRIM28-215ENST00000601150 WIPF2Q8TF74 440 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-215ENST00000601150 S100A16Q96FQ6 103 aaKnown RBP13.38□□□□□ -0.27
TRIM28-215ENST00000601150 GINS4Q9BRT9 223 aa13.38□□□□□ -0.27
TRIM28-215ENST00000601150 NAA50Q9GZZ1 169 aaKnown RBP13.38□□□□□ -0.27
TRIM28-215ENST00000601150 RNF150Q9ULK6 438 aa13.38□□□□□ -0.27
TRIM28-215ENST00000601150 IGKV1D-8A0A087WSZ0 117 aa13.37□□□□□ -0.27
TRIM28-215ENST00000601150 GPR12P47775 334 aa13.37□□□□□ -0.27
TRIM28-215ENST00000601150 CTF1Q16619 201 aa13.37□□□□□ -0.27
TRIM28-215ENST00000601150 CENPVQ7Z7K6 275 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-215ENST00000601150 SAMD12Q8N8I0 201 aa13.37□□□□□ -0.27
TRIM28-215ENST00000601150 Q8N9W7 124 aa13.37□□□□□ -0.27
TRIM28-215ENST00000601150 AUNIPQ9H7T9 357 aa13.37□□□□□ -0.27
TRIM28-215ENST00000601150 PLSCR3Q9NRY6 295 aa13.37□□□□□ -0.27
TRIM28-215ENST00000601150 LIN7CQ9NUP9 197 aaKnown RBP13.37□□□□□ -0.27
TRIM28-215ENST00000601150 XRCC3O43542 346 aa13.36□□□□□ -0.27
TRIM28-215ENST00000601150 CTXN2P0C2S0 81 aa13.36□□□□□ -0.27
TRIM28-215ENST00000601150 CT45A6P0DMU7 189 aa13.36□□□□□ -0.27
TRIM28-215ENST00000601150 CT45A5P0DMU8 189 aa13.36□□□□□ -0.27
TRIM28-215ENST00000601150 CT45A7P0DMV0 189 aa13.36□□□□□ -0.27
TRIM28-215ENST00000601150 C2orf68Q2NKX9 166 aa13.36□□□□□ -0.27
TRIM28-215ENST00000601150 FAM131AQ6UXB0 335 aa13.36□□□□□ -0.27
TRIM28-215ENST00000601150 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-215ENST00000601150 RBMXL1Q96E39 390 aaKnown RBP13.36□□□□□ -0.27
TRIM28-215ENST00000601150 RASL11BQ9BPW5 248 aa13.36□□□□□ -0.27
TRIM28-215ENST00000601150 PKD1L1Q8TDX9 2849 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 OR5H14A6NHG9 310 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 IGHG2P01859 326 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 OR8U9P0C7N5 309 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 CD28P10747 220 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 MC5RP33032 325 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 RORCP51449 518 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 F2RL1P55085 397 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 ACTBP60709 375 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 MMDQ15546 238 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 TREML4Q6UXN2 200 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 SLC35E3Q7Z769 313 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 H1FOOQ8IZA3 346 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-215ENST00000601150 OR5AU1Q8NGC0 362 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 OR8U1Q8NH10 309 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 ACOT12Q8WYK0 555 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 OR2D2Q9H210 308 aa13.35□□□□□ -0.27
TRIM28-215ENST00000601150 H0YJW9 148 aa13.34□□□□□ -0.27
TRIM28-215ENST00000601150 PROP1O75360 226 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms