RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 C11orf42Q8N5U0 333 aa12.65□□□□□ -0.38
UPF1-206ENST00000598471 LINC00311Q8N616 119 aa12.65□□□□□ -0.38
UPF1-206ENST00000598471 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.65□□□□□ -0.38
UPF1-206ENST00000598471 ADAD2Q8NCV1 583 aaKnown RBP12.65□□□□□ -0.38
UPF1-206ENST00000598471 ZNF439Q8NDP4 499 aa12.65□□□□□ -0.38
UPF1-206ENST00000598471 BVESQ8NE79 360 aa12.65□□□□□ -0.38
UPF1-206ENST00000598471 RTN4IP1Q8WWV3 396 aaPredicted RBP12.65□□□□□ -0.38
UPF1-206ENST00000598471 C1orf159Q96HA4 380 aa12.65□□□□□ -0.38
UPF1-206ENST00000598471 CLEC7AQ9BXN2 247 aa12.65□□□□□ -0.38
UPF1-206ENST00000598471 PIPOXQ9P0Z9 390 aa12.65□□□□□ -0.38
UPF1-206ENST00000598471 RNF150Q9ULK6 438 aa12.65□□□□□ -0.38
UPF1-206ENST00000598471 KCNIP3Q9Y2W7 256 aa12.65□□□□□ -0.38
UPF1-206ENST00000598471 ALG5Q9Y673 324 aa12.65□□□□□ -0.38
UPF1-206ENST00000598471 POLQO75417 2590 aa12.65□□□□□ -0.39
UPF1-206ENST00000598471 CSMD2Q7Z408 3487 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 A0A096LNT2 108 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 TRAV20A0A0B4J274 112 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 C7orf66A4D0T2 115 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 HLA-AP01891 365 aaKnown RBP12.64□□□□□ -0.39
UPF1-206ENST00000598471 VAMP1P23763 118 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 CBX3Q13185 183 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 CT45A1Q5HYN5 189 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 NCR3LG1Q68D85 454 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 LYG2Q86SG7 212 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 KRTAP1-3Q8IUG1 177 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 Q8N7P7 452 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 LINC01356Q8N9X3 169 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 OR10X1Q8NGY0 326 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 CT45A3Q8NHU0 189 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 ZNF596Q8TC21 504 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 CAPSLQ8WWF8 208 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 TMEM230Q96A57 120 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 ABHD14BQ96IU4 210 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 SEC22CQ9BRL7 303 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 AGMATQ9BSE5 352 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 IFI27L2Q9H2X8 130 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 NAA60Q9H7X0 242 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 UNKLQ9H9P5 680 aaKnown RBP12.64□□□□□ -0.39
UPF1-206ENST00000598471 MMP26Q9NRE1 261 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 AMMECR1Q9Y4X0 333 aaPredicted RBP12.64□□□□□ -0.39
UPF1-206ENST00000598471 INSIG2Q9Y5U4 225 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 DOCK11Q5JSL3 2073 aa12.64□□□□□ -0.39
UPF1-206ENST00000598471 IGHV2-26A0A0B4J1V2 119 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 A0A0B4J293 547 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 A0A1B0GVG6 124 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 CRYM-AS1A6NIL9 109 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 J3QR06 171 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 RAB29O14966 203 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 SLC31A2O15432 143 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 TOX4O94842 621 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 GATA3P23771 443 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 COX7A1P24310 79 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 GZMKP49863 264 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 DHODHQ02127 395 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 CATR1Q13166 79 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 DHRS2Q13268 280 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 PPP1R1AQ13522 171 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 KCTD9Q7L273 389 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 VMO1Q7Z5L0 202 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 LDLRAD3Q86YD5 345 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 LYG1Q8N1E2 194 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 DRAM1Q8N682 238 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 ZNF431Q8TF32 576 aaPredicted RBP12.63□□□□□ -0.39
UPF1-206ENST00000598471 S1PR3Q99500 378 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 SIRPDQ9H106 197 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 OR51J1Q9H342 316 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 SIRT7Q9NRC8 400 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 GAB2Q9UQC2 676 aa12.63□□□□□ -0.39
UPF1-206ENST00000598471 PRRC2AP48634 2157 aaKnown RBP12.63□□□□□ -0.39
UPF1-206ENST00000598471 CSMD1Q96PZ7 3565 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 A0A0A6YYJ9 748 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 A0A1W2PPE3 182 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 C9orf170A2RU37 121 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 MPPED1O15442 326 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 SSNA1O43805 119 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 B3GALNT1O75752 331 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 SFT2D2O95562 160 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 IFNA2P01563 188 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 ZNF134P52741 427 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 DCAF12L2Q5VW00 463 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 ZNF626Q68DY1 528 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 ZNF66Q6ZN08 573 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 TBC1D26Q86UD7 250 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 BEND2Q8NDZ0 799 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 HSD17B10Q99714 261 aaKnown RBP12.62□□□□□ -0.39
UPF1-206ENST00000598471 PCGF1Q9BSM1 259 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 LIN7CQ9NUP9 197 aaKnown RBP12.62□□□□□ -0.39
UPF1-206ENST00000598471 SDHAF2Q9NX18 166 aa12.62□□□□□ -0.39
UPF1-206ENST00000598471 PIGBOS1A0A0B4J2F0 54 aa12.61□□□□□ -0.39
UPF1-206ENST00000598471 C3orf85A0A1B0GTC6 90 aa12.61□□□□□ -0.39
UPF1-206ENST00000598471 TNFSF12O43508 249 aa12.61□□□□□ -0.39
UPF1-206ENST00000598471 PGLYRP1O75594 196 aaPredicted RBP12.61□□□□□ -0.39
UPF1-206ENST00000598471 DUS4LO95620 317 aaKnown RBP12.61□□□□□ -0.39
UPF1-206ENST00000598471 SRPXP78539 464 aa12.61□□□□□ -0.39
UPF1-206ENST00000598471 PAX8Q06710 450 aa12.61□□□□□ -0.39
UPF1-206ENST00000598471 UTF1Q5T230 341 aa12.61□□□□□ -0.39
UPF1-206ENST00000598471 FAM71F2Q6NXP2 309 aa12.61□□□□□ -0.39
UPF1-206ENST00000598471 PNKDQ8N490 385 aa12.61□□□□□ -0.39
UPF1-206ENST00000598471 COQ8AQ8NI60 647 aa12.61□□□□□ -0.39
UPF1-206ENST00000598471 CASTOR1Q8WTX7 329 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms