RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 PLXNB1O43157 2135 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 SHISA3A0PJX4 238 aa12.03□□□□□ -0.48
TRIM28-203ENST00000593582 ITGB1BP1O14713 200 aa12.03□□□□□ -0.48
TRIM28-203ENST00000593582 CEACAM6P40199 344 aa12.03□□□□□ -0.48
TRIM28-203ENST00000593582 ACTBP60709 375 aa12.03□□□□□ -0.48
TRIM28-203ENST00000593582 RPL23AP62750 156 aaKnown RBP12.03□□□□□ -0.48
TRIM28-203ENST00000593582 PHF21AQ96BD5 680 aa12.03□□□□□ -0.48
TRIM28-203ENST00000593582 RAB3CQ96E17 227 aa12.03□□□□□ -0.48
TRIM28-203ENST00000593582 RBMXL1Q96E39 390 aaKnown RBP12.03□□□□□ -0.48
TRIM28-203ENST00000593582 ZNF251Q9BRH9 671 aa12.03□□□□□ -0.48
TRIM28-203ENST00000593582 NOTCH3Q9UM47 2321 aa12.02□□□□□ -0.49
TRIM28-203ENST00000593582 NUDT19A8MXV4 375 aa12.02□□□□□ -0.49
TRIM28-203ENST00000593582 SCTP09683 121 aa12.02□□□□□ -0.49
TRIM28-203ENST00000593582 CD3GP09693 182 aa12.02□□□□□ -0.49
TRIM28-203ENST00000593582 SLC2A2P11168 524 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-203ENST00000593582 RAB6AP20340 208 aa12.02□□□□□ -0.49
TRIM28-203ENST00000593582 VDAC1P21796 283 aa12.02□□□□□ -0.49
TRIM28-203ENST00000593582 GADD45AP24522 165 aa12.02□□□□□ -0.49
TRIM28-203ENST00000593582 SLC6A1P30531 599 aa12.02□□□□□ -0.49
TRIM28-203ENST00000593582 PLA2G7Q13093 441 aa12.02□□□□□ -0.49
TRIM28-203ENST00000593582 PNLIPRP3Q17RR3 467 aa12.02□□□□□ -0.49
TRIM28-203ENST00000593582 REC114Q7Z4M0 266 aa12.02□□□□□ -0.49
TRIM28-203ENST00000593582 HSPB9Q9BQS6 159 aa12.02□□□□□ -0.49
TRIM28-203ENST00000593582 OR1A1Q9P1Q5 309 aa12.02□□□□□ -0.49
TRIM28-203ENST00000593582 ZNF107Q9UII5 783 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-203ENST00000593582 METTL21EPA6NDL7 271 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 OR5H14A6NHG9 310 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 TRDCB7Z8K6 153 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 NBR2O15453 112 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 IGLL1P15814 213 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 FGF9P31371 208 aaPredicted RBP12.01□□□□□ -0.49
TRIM28-203ENST00000593582 RPL39P5Q59GN2 51 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 CXorf66Q5JRM2 361 aaPredicted RBP12.01□□□□□ -0.49
TRIM28-203ENST00000593582 KLHL30-AS1Q8NEE0 82 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 OR10R2Q8NGX6 335 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 PTX4Q96A99 478 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 RCC1LQ96I51 464 aaKnown RBP12.01□□□□□ -0.49
TRIM28-203ENST00000593582 ABHD14BQ96IU4 210 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 RITA1Q96K30 269 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 AGMATQ9BSE5 352 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 PARP12Q9H0J9 701 aaKnown RBP12.01□□□□□ -0.49
TRIM28-203ENST00000593582 C11orf54Q9H0W9 315 aaPredicted RBP12.01□□□□□ -0.49
TRIM28-203ENST00000593582 NECAP2Q9NVZ3 263 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 TXNL4BQ9NX01 149 aaKnown RBP12.01□□□□□ -0.49
TRIM28-203ENST00000593582 KIAA1456Q9P272 454 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 STUB1Q9UNE7 303 aa12.01□□□□□ -0.49
TRIM28-203ENST00000593582 A0A075B6Q4 140 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 A0A0B4J203 849 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 DUS4LO95620 317 aaKnown RBP12□□□□□ -0.49
TRIM28-203ENST00000593582 PRB2P02812 416 aaPredicted RBP12□□□□□ -0.49
TRIM28-203ENST00000593582 IGF1P05019 195 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 CT45A6P0DMU7 189 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 CT45A5P0DMU8 189 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 CT45A7P0DMV0 189 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 OR5H8P0DN80 308 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 GNB3P16520 340 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 MC5RP33032 325 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 FOXE3Q13461 319 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 KIR2DS1Q14954 304 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 MOGAT2Q3SYC2 334 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 ZNF773Q6PK81 442 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 FAM131AQ6UXB0 335 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 C8orf86Q6ZUL3 223 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 ZNF695Q8IW36 515 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 OR4A4PQ8NGN8 299 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 ZNF221Q9UK13 617 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 ZNF580Q9UK33 172 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 SSR3Q9UNL2 185 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 KCNK7Q9Y2U2 307 aa12□□□□□ -0.49
TRIM28-203ENST00000593582 NOTOA8MTQ0 251 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 H7C2Y5 167 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 RAB27BO00194 218 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 FABP7O15540 132 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 HLA-DRB1P01911 266 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 RPLP1P05386 114 aaKnown RBP11.99□□□□□ -0.49
TRIM28-203ENST00000593582 ELANEP08246 267 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 HIST1H1DP16402 221 aaKnown RBP11.99□□□□□ -0.49
TRIM28-203ENST00000593582 CNTFRP26992 372 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 SERPINB10P48595 397 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 THBS3P49746 956 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 C5orf64Q2M2E5 130 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 LIN54Q6MZP7 749 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 NR2C2APQ86WQ0 139 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 MRPL41Q8IXM3 137 aaKnown RBP11.99□□□□□ -0.49
TRIM28-203ENST00000593582 LINC00482Q8N8I6 264 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 NPBQ8NG41 125 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 CHCHD6Q9BRQ6 235 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 ATG5Q9H1Y0 275 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 RNF150Q9ULK6 438 aa11.99□□□□□ -0.49
TRIM28-203ENST00000593582 IGKV1-6A0A0C4DH72 117 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 SMIM30A4D0T7 59 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 H0YJW9 148 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 MFNGO00587 321 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 BET1O15155 118 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 IGHG4P01861 327 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 FCGR3AP08637 254 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 GSTP1P09211 210 aaKnown RBP11.98□□□□□ -0.49
TRIM28-203ENST00000593582 TALDO1P37837 337 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 MYCNOSP40205 109 aa11.98□□□□□ -0.49
TRIM28-203ENST00000593582 CFHR3Q02985 330 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms