RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 ITGB1BP1O14713 200 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 RRHO14718 337 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 PROP1O75360 226 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 SAP30O75446 220 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 RGS11O94810 467 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 BAG2O95816 211 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 SNRPBP14678 240 aaKnown RBP9.03□□□□□ -0.96
CLIP3-204ENST00000590559 TAS2R43P59537 309 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 ST3GAL4Q11206 333 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 AKIRIN2Q53H80 203 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 FAM131AQ6UXB0 335 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 OVCH2Q7RTZ1 564 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 Q8N1Y9 231 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 SVOPQ8N4V2 548 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 OR2AK2Q8NG84 335 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 OR5AN1Q8NGI8 311 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 CASTOR1Q8WTX7 329 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 RHOVQ96L33 236 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 TM2D1Q9BX74 207 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 FBXL15Q9H469 300 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 PIPOXQ9P0Z9 390 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 FOXA2Q9Y261 457 aaPredicted RBP9.03□□□□□ -0.96
CLIP3-204ENST00000590559 A0A1W2PN81 502 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 EFCAB10A6NFE3 127 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 OR5H14A6NHG9 310 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 H0YJW9 148 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 RAB29O14966 203 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 ST8SIA5O15466 376 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 OR8U9P0C7N5 309 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 CELP19835 753 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 CHRNA7P36544 502 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 RPS27AP62979 156 aaKnown RBP9.02□□□□□ -0.97
CLIP3-204ENST00000590559 QRFPP83859 136 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 UNC119Q13432 240 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 ECSCRQ19T08 205 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 RPL39P5Q59GN2 51 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 C1orf100Q5SVJ3 147 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 PYHIN1Q6K0P9 492 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 LRRTM1Q86UE6 522 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 OR6Q1Q8NGQ2 317 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 FBLIM1Q8WUP2 373 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 FAM46BQ96A09 425 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 CITED4Q96RK1 184 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 RNF5Q99942 180 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 FAAP24Q9BTP7 215 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 PARP12Q9H0J9 701 aaKnown RBP9.02□□□□□ -0.97
CLIP3-204ENST00000590559 GHITMQ9H3K2 345 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 C19orf73Q9NVV2 129 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 CNOT2Q9NZN8 540 aaKnown RBP9.02□□□□□ -0.97
CLIP3-204ENST00000590559 KIAA1456Q9P272 454 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 SLC23A1Q9UHI7 598 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 GAB2Q9UQC2 676 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 ERGIC3Q9Y282 383 aa9.02□□□□□ -0.97
CLIP3-204ENST00000590559 A0A0A6YYD4 124 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 TRBV6-6A0A0A6YYG2 114 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 PNMA8CA0A1B0GUJ8 204 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 IGLV1-51P01701 117 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 HSPB1P04792 205 aaKnown RBP9.01□□□□□ -0.97
CLIP3-204ENST00000590559 UBBP0CG47 229 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 HTR2CP28335 458 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 MC5RP33032 325 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 SSBP2P81877 361 aaPredicted RBP9.01□□□□□ -0.97
CLIP3-204ENST00000590559 MED21Q13503 144 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 INSL4Q14641 139 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 TTC23Q5W5X9 447 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 OR10K2Q6IF99 312 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 C6orf201Q7Z4U5 140 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 NANOGP1Q8N7R0 232 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 ARPC1AQ92747 370 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 THRSPQ92748 146 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 EDA2RQ9HAV5 297 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 PLCXD1Q9NUJ7 323 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 FKBP14Q9NWM8 211 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 PSORS1C1Q9UIG5 152 aa9.01□□□□□ -0.97
CLIP3-204ENST00000590559 LCE6AA0A183 80 aa9□□□□□ -0.97
CLIP3-204ENST00000590559 FOXI3A8MTJ6 420 aaPredicted RBP9□□□□□ -0.97
CLIP3-204ENST00000590559 TMEM14DPA8MWL7 114 aa9□□□□□ -0.97
CLIP3-204ENST00000590559 ARPC1BO15143 372 aaKnown RBP9□□□□□ -0.97
CLIP3-204ENST00000590559 RBBP9O75884 186 aa9□□□□□ -0.97
CLIP3-204ENST00000590559 WNT4P56705 351 aa9□□□□□ -0.97
CLIP3-204ENST00000590559 GABPB1Q06547 395 aaPredicted RBP9□□□□□ -0.97
CLIP3-204ENST00000590559 TMEM267Q0VDI3 215 aaPredicted RBP9□□□□□ -0.97
CLIP3-204ENST00000590559 ZNF562Q6V9R5 426 aa9□□□□□ -0.97
CLIP3-204ENST00000590559 GLDNQ6ZMI3 551 aaPredicted RBP9□□□□□ -0.97
CLIP3-204ENST00000590559 PPP1R27Q86WC6 154 aa9□□□□□ -0.97
CLIP3-204ENST00000590559 SETD9Q8NE22 299 aa9□□□□□ -0.97
CLIP3-204ENST00000590559 PHYHIPQ92561 330 aa9□□□□□ -0.97
CLIP3-204ENST00000590559 PTX4Q96A99 478 aa9□□□□□ -0.97
CLIP3-204ENST00000590559 ABHD14BQ96IU4 210 aa9□□□□□ -0.97
CLIP3-204ENST00000590559 NICN1Q9BSH3 213 aa9□□□□□ -0.97
CLIP3-204ENST00000590559 FAM103A1Q9BTL3 118 aaKnown RBP9□□□□□ -0.97
CLIP3-204ENST00000590559 ZMAT4Q9H898 229 aa9□□□□□ -0.97
CLIP3-204ENST00000590559 GAR1Q9NY12 217 aaKnown RBP9□□□□□ -0.97
CLIP3-204ENST00000590559 STEAP1Q9UHE8 339 aa9□□□□□ -0.97
CLIP3-204ENST00000590559 ALMS1Q8TCU4 4167 aa8.99□□□□□ -0.97
CLIP3-204ENST00000590559 SLC22A1O15245 554 aa8.99□□□□□ -0.97
CLIP3-204ENST00000590559 IGHV3-11P01762 117 aa8.99□□□□□ -0.97
CLIP3-204ENST00000590559 GNAO1P09471 354 aa8.99□□□□□ -0.97
CLIP3-204ENST00000590559 IGHV4-30-4P0DP06 118 aa8.99□□□□□ -0.97
CLIP3-204ENST00000590559 LYL1P12980 280 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms