RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 GPR31O00270 319 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 B3GALNT1O75752 331 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 OR2A4O95047 310 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 PPIAL4FP0DN26 164 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 NKX2-5P52952 324 aaPredicted RBP8.4□□□□□ -1.06
SS18-210ENST00000578700 P2RX3P56373 397 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 EDDM3BP56851 147 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 TMEM33P57088 247 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 LMO4P61968 165 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 HMGN3Q15651 99 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 MIDNQ504T8 468 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 PRR31Q5SQ13 230 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 TEX36Q5VZQ5 186 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 SHISA2Q6UWI4 295 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 DEFB108BQ8NET1 73 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 OR5M8Q8NGP6 311 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 CCL17Q92583 94 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 SDSLQ96GA7 329 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 DUX5Q96PT3 197 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 OR2A7Q96R45 310 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 ZNF747Q9BV97 191 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 NCOR1P1Q9H4R4 102 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 NAA60Q9H7X0 242 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 RAB18Q9NP72 206 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 ESM1Q9NQ30 184 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 SLC2A9Q9NRM0 540 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 TMEM106BQ9NUM4 274 aa8.4□□□□□ -1.06
SS18-210ENST00000578700 TRGV10A0A0A0MS01 117 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 IGHV1-69-2A0A0G2JMI3 117 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 ODAMA1E959 279 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.39□□□□□ -1.07
SS18-210ENST00000578700 NDUFA2O43678 99 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 ZNF737O75373 536 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 TUSC2O75896 110 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 HLA-GP17693 338 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 CEACAM6P40199 344 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 FOXL1Q12952 345 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 PHLDA2Q53GA4 152 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 STUMQ69YW2 141 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 TREML4Q6UXN2 200 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 Q6ZPA2 131 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 H1FOOQ8IZA3 346 aaPredicted RBP8.39□□□□□ -1.07
SS18-210ENST00000578700 TEX29Q8N6K0 151 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 ANGPTL6Q8NI99 470 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 NANPQ8TBE9 248 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 MRGPRDQ8TDS7 321 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 ARL11Q969Q4 196 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 TMEM230Q96A57 120 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 AKR1E2Q96JD6 320 aa8.39□□□□□ -1.07
SS18-210ENST00000578700 UBE2J1Q9Y385 318 aaPredicted RBP8.39□□□□□ -1.07
SS18-210ENST00000578700 TRAV39A0A0B4J263 110 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 IGKV1-6A0A0C4DH72 117 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 C3orf85A0A1B0GTC6 90 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 C12orf77C9JDV5 145 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 SMLR1H3BR10 107 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 TMEM178BH3BS89 294 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 MPPED1O15442 326 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 ZNF205O95201 554 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 SIX6O95475 246 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 HBZP02008 142 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 PET100P0DJ07 73 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 GLIPR1P48060 266 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 H2BFSP57053 126 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 RND3P61587 244 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 UBA52P62987 128 aaKnown RBP8.38□□□□□ -1.07
SS18-210ENST00000578700 HERPUD1Q15011 391 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 TMEM30BQ3MIR4 351 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 SPRNQ5BIV9 151 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 DCAF12L2Q5VW00 463 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 LGI3Q8N145 548 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 ZNRF1Q8ND25 227 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 OR10V1Q8NGI7 309 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 THAP6Q8TBB0 222 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 EDARADDQ8WWZ3 215 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 GALNT14Q96FL9 552 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 COQ2Q96H96 371 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 CCL13Q99616 98 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 C7orf69Q9H7B7 122 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 RDH8Q9NYR8 311 aa8.38□□□□□ -1.07
SS18-210ENST00000578700 hADV38S2A0JD32 116 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 HSD17B6O14756 317 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 SIGLEC5O15389 551 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 NDUFB3O43676 98 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 GYPAP02724 150 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 HKR1P10072 659 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 NDUFB7P17568 137 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 ZFP36P26651 326 aaKnown RBP8.37□□□□□ -1.07
SS18-210ENST00000578700 GNRHRP30968 328 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 NUP62P37198 522 aaPredicted RBP8.37□□□□□ -1.07
SS18-210ENST00000578700 SUPT4H1P63272 117 aaKnown RBP8.37□□□□□ -1.07
SS18-210ENST00000578700 HTD2P86397 168 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 LRRC10Q5BKY1 277 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 RBMS3Q6XE24 437 aaKnown RBP8.37□□□□□ -1.07
SS18-210ENST00000578700 ZNF788Q6ZQV5 615 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 LIAT1Q6ZQX7 453 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 TBC1D26Q86UD7 250 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 ZBTB34Q8NCN2 500 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 UNKLQ9H9P5 680 aaKnown RBP8.37□□□□□ -1.07
SS18-210ENST00000578700 OR2S2Q9NQN1 319 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 CCL28Q9NRJ3 127 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms