RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 BCL2L14Q9BZR8 327 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 SPANXB1Q9NS25 103 aaPredicted RBP4.16□□□□□ -1.74
VPS53-219ENST00000576019 FAM206AQ9NX38 181 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 PSG8Q9UQ74 426 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 HS3ST2Q9Y278 367 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 SIGLEC7Q9Y286 467 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 RNF213Q63HN8 5207 aa4.16□□□□□ -1.74
VPS53-219ENST00000576019 SPTBP11277 2137 aa4.15□□□□□ -1.74
VPS53-219ENST00000576019 IGHV5-51A0A0C4DH38 117 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 CEACAM18A8MTB9 384 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 EFCAB9A8MZ26 197 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 CXCR6O00574 342 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 ENTPD6O75354 484 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 ZNF189O75820 626 aaPredicted RBP4.15□□□□□ -1.75
VPS53-219ENST00000576019 SLC2A1P11166 492 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 BAXQ07812 192 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 HLA-DRB5Q30154 266 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 ACSM3Q53FZ2 586 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 MARC1Q5VT66 337 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 HHATQ5VTY9 493 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 ARL9Q6T311 187 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 RTL4Q6ZR62 310 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 H2AFVQ71UI9 128 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 ZCCHC24Q8N2G6 241 aaKnown RBP4.15□□□□□ -1.75
VPS53-219ENST00000576019 CCNYL1Q8N7R7 359 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 TMEM161BQ8NDZ6 487 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 HGDQ93099 445 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 RERGQ96A58 199 aaPredicted RBP4.15□□□□□ -1.75
VPS53-219ENST00000576019 TESCQ96BS2 214 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 MAGEB18Q96M61 343 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 PACRGQ96M98 296 aaPredicted RBP4.15□□□□□ -1.75
VPS53-219ENST00000576019 METTL26Q96S19 204 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 SELENOSQ9BQE4 189 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 RHOFQ9HBH0 211 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 RBM22Q9NW64 420 aaKnown RBP eCLIP4.15□□□□□ -1.75
VPS53-219ENST00000576019 ZNF226Q9NYT6 803 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 PROCRQ9UNN8 238 aa4.15□□□□□ -1.75
VPS53-219ENST00000576019 DYNC1H1Q14204 4646 aaKnown RBP4.15□□□□□ -1.75
VPS53-219ENST00000576019 ALMS1Q8TCU4 4167 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.14□□□□□ -1.75
VPS53-219ENST00000576019 SRRM5B3KS81 715 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 F5H5K5 113 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 TCAPO15273 167 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 NDUFS5O43920 106 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 SUPT7LO94864 414 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 HSPB1P04792 205 aaKnown RBP4.14□□□□□ -1.75
VPS53-219ENST00000576019 C8orf88P0DMB2 117 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 TALDO1P37837 337 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 IFNGR2P38484 337 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 CAPZBP47756 277 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 GCLMP48507 274 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 ACOT2P49753 483 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 CXCR4P61073 352 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 LSM6P62312 80 aaKnown RBP4.14□□□□□ -1.75
VPS53-219ENST00000576019 PRDX1Q06830 199 aaKnown RBP4.14□□□□□ -1.75
VPS53-219ENST00000576019 CYP24A1Q07973 514 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 AESQ08117 197 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 NAB1Q13506 487 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 CASP8Q14790 479 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 HERPUD1Q15011 391 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 PMVKQ15126 192 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 Q1RN00 199 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 C6orf99Q4VX62 202 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 UGT2A3Q6UWM9 527 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 ACP7Q6ZNF0 438 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 POM121L12Q8N7R1 296 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 PIGXQ8TBF5 258 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 RXFP4Q8TDU9 374 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 C22orf15Q8WYQ4 148 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 RAB8BQ92930 207 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 VGLL1Q99990 258 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 FAAP24Q9BTP7 215 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 DEFB126Q9BYW3 111 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 FBXO6Q9NRD1 293 aaPredicted RBP4.14□□□□□ -1.75
VPS53-219ENST00000576019 U3KQK5 164 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 ALPK2Q86TB3 2170 aa4.14□□□□□ -1.75
VPS53-219ENST00000576019 DAPL1A0PJW8 107 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 MYL12BO14950 172 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 SLC22A5O76082 557 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 IGLV3-27P01718 113 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 TRBV12-3P01733 135 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 TCRBP04435 133 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 CYB561P49447 251 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 CRIP2P52943 208 aaPredicted RBP4.13□□□□□ -1.75
VPS53-219ENST00000576019 SYNJ2BPP57105 145 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 TFAMQ00059 246 aaKnown RBP4.13□□□□□ -1.75
VPS53-219ENST00000576019 SPIN4Q56A73 249 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 AVPI1Q5T686 147 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 ZC2HC1BQ5TFG8 222 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 TRAPPC5Q8IUR0 188 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 CPNE9Q8IYJ1 553 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 GPD1LQ8N335 351 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 OR11G2Q8NGC1 345 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 OR1S1Q8NH92 325 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 ERMNQ8TAM6 284 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 BIRC8Q96P09 236 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 OR2M4Q96R27 311 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 STACQ99469 402 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 NRIP2Q9BQI9 281 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 TMEM243Q9BU79 118 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms