RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 A0A096LNJ9 63 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 TCRBV9S1A1TA0A576 114 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 MAP1LC3B2A6NCE7 125 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 I3L521 148 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 CORTO00230 105 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 ENSAO43768 121 aaKnown RBP2.84□□□□□ -1.95
NUP88-208ENST00000574087 CLDN11O75508 207 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 GCM2O75603 506 aaPredicted RBP2.84□□□□□ -1.95
NUP88-208ENST00000574087 SNAPC5O75971 98 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 GADD45GO95257 159 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 C6orf47O95873 294 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 HBE1P02100 147 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 ZNF250P15622 560 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 CASP1P29466 404 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 BTCP35070 178 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 APLNRP35414 380 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 GPM6AP51674 278 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 LINC00315P59091 139 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 TPI1P60174 286 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 HERVK_113P61574 105 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 HIST1H3AP68431 136 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 HBA1P69905 142 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 H3F3AP84243 136 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 BAXQ07812 192 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 HLA-DRB5Q30154 266 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 TMEM255AQ5JRV8 349 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 C1orf194Q5T5A4 169 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 ANKRD22Q5VYY1 191 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 TMEM215Q68D42 235 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 LAMTOR1Q6IAA8 161 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 SFXN4Q6P4A7 337 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 HIST2H3AQ71DI3 136 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 FA2HQ7L5A8 372 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 CMC1Q7Z7K0 106 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 UBALD2Q8IYN6 164 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 UMODL1-AS1Q8N2C9 162 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 ZNF557Q8N988 423 aaPredicted RBP2.84□□□□□ -1.95
NUP88-208ENST00000574087 ZNF439Q8NDP4 499 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 DUSP18Q8NEJ0 188 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 OR4E2Q8NGC2 313 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 OR10G4Q8NGN3 311 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 RAB2BQ8WUD1 216 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 CANT1Q8WVQ1 401 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 ASB13Q8WXK3 278 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 CLDN23Q96B33 292 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 ROPN1LQ96C74 230 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 PIK3IP1Q96FE7 263 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 SMIM8Q96KF7 97 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 ZNF681Q96N22 645 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 OR52E6Q96RD3 313 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 CDX2Q99626 313 aaPredicted RBP2.84□□□□□ -1.95
NUP88-208ENST00000574087 SULT4A1Q9BR01 284 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 AGMATQ9BSE5 352 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 SNHG12Q9BXW3 62 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 RSPO3Q9BXY4 272 aaPredicted RBP2.84□□□□□ -1.95
NUP88-208ENST00000574087 LCE3DQ9BYE3 92 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 MAP1LC3BQ9GZQ8 125 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 MS4A6AQ9H2W1 248 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 OR51I1Q9H343 314 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 CACYBPQ9HB71 228 aaKnown RBP2.84□□□□□ -1.95
NUP88-208ENST00000574087 ACOT13Q9NPJ3 140 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 MCUBQ9NWR8 336 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 SPANXCQ9NY87 97 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 IDI2-AS1Q9NZ38 188 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 OPTCQ9UBM4 332 aa2.84□□□□□ -1.95
NUP88-208ENST00000574087 CARHSP1Q9Y2V2 147 aaKnown RBP2.84□□□□□ -1.95
NUP88-208ENST00000574087 PLCH2O75038 1416 aa2.84□□□□□ -1.96
NUP88-208ENST00000574087 AKAP11Q9UKA4 1901 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 SYCP2Q9BX26 1530 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 MYH10P35580 1976 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 PREX1Q8TCU6 1659 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 QRICH2Q9H0J4 1663 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 ITSN1Q15811 1721 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 CRYBG1Q9Y4K1 1723 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 IGLV4-69A0A075B6H9 119 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 A0A0J9YY10 115 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 A0A1B0GW55 424 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 A0A1B0GX78 115 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 OR4C46A6NHA9 309 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 CEACAM18A8MTB9 384 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 J3QRK9 145 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 MFNGO00587 321 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 DEGS1O15121 323 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 CCL25O15444 150 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 UBBP0CG47 229 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 DUX4L2P0CJ85 424 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 DUX4L3P0CJ86 424 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 DUX4L5P0CJ88 424 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 DUX4L6P0CJ89 424 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 DUX4L7P0CJ90 424 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 SULT1A3P0DMM9 295 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 SULT1A4P0DMN0 295 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 OR5H8P0DN80 308 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 IL7P13232 177 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 TBPP20226 339 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 SLC2A5P22732 501 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 KDELR1P24390 212 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 PYCR1P32322 319 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 HRH1P35367 487 aa2.83□□□□□ -1.96
NUP88-208ENST00000574087 OR1E2P47887 323 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms