RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 JPT1Q9UK76 154 aa9.65□□□□□ -0.86
CCDC40-208ENST00000572270 WASHC3Q9Y3C0 194 aa9.65□□□□□ -0.86
CCDC40-208ENST00000572270 DMBT1Q9UGM3 2413 aaPredicted RBP9.64□□□□□ -0.87
CCDC40-208ENST00000572270 GEMIN2O14893 280 aaKnown RBP9.64□□□□□ -0.87
CCDC40-208ENST00000572270 SPDEFO95238 335 aa9.64□□□□□ -0.87
CCDC40-208ENST00000572270 OR2T7P0C7T2 308 aa9.64□□□□□ -0.87
CCDC40-208ENST00000572270 PPP1CCP36873 323 aaKnown RBP9.64□□□□□ -0.87
CCDC40-208ENST00000572270 EXOSC2Q13868 293 aaKnown RBP9.64□□□□□ -0.87
CCDC40-208ENST00000572270 PSG5Q15238 335 aa9.64□□□□□ -0.87
CCDC40-208ENST00000572270 RBMY1FQ15415 496 aaKnown RBP9.64□□□□□ -0.87
CCDC40-208ENST00000572270 MED22Q15528 200 aa9.64□□□□□ -0.87
CCDC40-208ENST00000572270 MPV17LQ2QL34 196 aa9.64□□□□□ -0.87
CCDC40-208ENST00000572270 FAM98BQ52LJ0 330 aaKnown RBP9.64□□□□□ -0.87
CCDC40-208ENST00000572270 GID4Q8IVV7 300 aa9.64□□□□□ -0.87
CCDC40-208ENST00000572270 OR2AK2Q8NG84 335 aa9.64□□□□□ -0.87
CCDC40-208ENST00000572270 OR10H4Q8NGA5 316 aa9.64□□□□□ -0.87
CCDC40-208ENST00000572270 OR51A4Q8NGJ6 313 aa9.64□□□□□ -0.87
CCDC40-208ENST00000572270 OR5D14Q8NGL3 314 aa9.64□□□□□ -0.87
CCDC40-208ENST00000572270 OR1L6Q8NGR2 347 aa9.64□□□□□ -0.87
CCDC40-208ENST00000572270 OR52N1Q8NH53 320 aa9.64□□□□□ -0.87
CCDC40-208ENST00000572270 TSNAXQ99598 290 aaKnown RBP9.64□□□□□ -0.87
CCDC40-208ENST00000572270 HMGB1P1B2RPK0 211 aaPredicted RBP9.63□□□□□ -0.87
CCDC40-208ENST00000572270 GABRPO00591 440 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 TUSC2O75896 110 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 ATP6V1B2P21281 511 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 CBLN1P23435 193 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 TP53I3Q53FA7 332 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 NHLRC3Q5JS37 347 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 SOHLH1Q5JUK2 328 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 GLDNQ6ZMI3 551 aaPredicted RBP9.63□□□□□ -0.87
CCDC40-208ENST00000572270 SERPINA12Q8IW75 414 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 SLC38A6Q8IZM9 456 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 OR52L2PQ8NGH6 319 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 CACNG8Q8WXS5 425 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 RARRES2Q99969 163 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 ALG8Q9BVK2 526 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 FRRS1LQ9P0K9 344 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 PIPOXQ9P0Z9 390 aa9.63□□□□□ -0.87
CCDC40-208ENST00000572270 MCRIP1C9JLW8 97 aa9.62□□□□□ -0.87
CCDC40-208ENST00000572270 H0YJW9 148 aa9.62□□□□□ -0.87
CCDC40-208ENST00000572270 GNGT2O14610 69 aa9.62□□□□□ -0.87
CCDC40-208ENST00000572270 SNX3O60493 162 aa9.62□□□□□ -0.87
CCDC40-208ENST00000572270 CST1P01037 141 aa9.62□□□□□ -0.87
CCDC40-208ENST00000572270 RPL35AP18077 110 aaKnown RBP9.62□□□□□ -0.87
CCDC40-208ENST00000572270 FCGR2BP31994 310 aaPredicted RBP9.62□□□□□ -0.87
CCDC40-208ENST00000572270 LGALS9BQ3B8N2 356 aa9.62□□□□□ -0.87
CCDC40-208ENST00000572270 NR2C2APQ86WQ0 139 aa9.62□□□□□ -0.87
CCDC40-208ENST00000572270 POM121L12Q8N7R1 296 aa9.62□□□□□ -0.87
CCDC40-208ENST00000572270 PHB2Q99623 299 aa9.62□□□□□ -0.87
CCDC40-208ENST00000572270 METTL9Q9H1A3 318 aa9.62□□□□□ -0.87
CCDC40-208ENST00000572270 TAF9BQ9HBM6 251 aa9.62□□□□□ -0.87
CCDC40-208ENST00000572270 KCNIP1Q9NZI2 227 aa9.62□□□□□ -0.87
CCDC40-208ENST00000572270 IGHV4-4A0A075B6R2 117 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.61□□□□□ -0.87
CCDC40-208ENST00000572270 FAM223BA6NKX1 122 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 LGALS9O00182 355 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 RAB29O14966 203 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 YPEL1O60688 119 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 P0DMU3 169 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 FAM231AP0DMU4 169 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 FAM231CP0DMU5 169 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 CT45A6P0DMU7 189 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 CT45A5P0DMU8 189 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 CT45A7P0DMV0 189 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 ANXA8P13928 327 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 RCC1P18754 421 aaPredicted RBP9.61□□□□□ -0.87
CCDC40-208ENST00000572270 SERPINA2P20848 420 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 EPHA2P29317 976 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 ATP6V1E1P36543 226 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 CRISP1P54107 249 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 ATP5G2Q06055 141 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 FAM209BQ5JX69 171 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 AADACL4Q5VUY2 407 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 PVRIGQ6DKI7 326 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 RBPMS2Q6ZRY4 209 aaKnown RBP9.61□□□□□ -0.87
CCDC40-208ENST00000572270 FAM223AQ8IWN6 122 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 KCNG3Q8TAE7 436 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 YPEL2Q96QA6 119 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 S100A13Q99584 98 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 SPACA1Q9HBV2 294 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 WARS2Q9UGM6 360 aaKnown RBP9.61□□□□□ -0.87
CCDC40-208ENST00000572270 MLXQ9UH92 298 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 UBQLN2Q9UHD9 624 aa9.61□□□□□ -0.87
CCDC40-208ENST00000572270 ZNF230Q9UIE0 474 aaPredicted RBP9.61□□□□□ -0.87
CCDC40-208ENST00000572270 TRAV25A0A0B4J276 109 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 TCRBV5S2A0A599 114 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 FAM90A23PA8MXZ1 464 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 H3BNX3 289 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 M0R129 80 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 GGCTO75223 188 aaKnown RBP9.6□□□□□ -0.87
CCDC40-208ENST00000572270 CDRT1O95170 752 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 MAS1P04201 325 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 HTR1AP08908 422 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 T-ENOLP0DO92 83 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 CPEP16870 476 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 RAB3AP20336 220 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 PRDX6P30041 224 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 RHOGP84095 191 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 HTD2P86397 168 aa9.6□□□□□ -0.87
CCDC40-208ENST00000572270 RPL39P5Q59GN2 51 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms