RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TOLLIPQ9H0E2 274 aa15.66■□□□□ 0.1
CLN3-225ENST00000566824 ANXA10Q9UJ72 324 aa15.66■□□□□ 0.1
CLN3-225ENST00000566824 DPPA5A6NC42 116 aa15.65■□□□□ 0.1
CLN3-225ENST00000566824 IL3RAP26951 378 aa15.65■□□□□ 0.1
CLN3-225ENST00000566824 BRS3P32247 399 aa15.65■□□□□ 0.1
CLN3-225ENST00000566824 CCDC144NLQ6NUI1 221 aa15.65■□□□□ 0.1
CLN3-225ENST00000566824 Q6ZSV7 163 aa15.65■□□□□ 0.1
CLN3-225ENST00000566824 ZNF833PQ6ZTB9 187 aa15.65■□□□□ 0.1
CLN3-225ENST00000566824 H1FOOQ8IZA3 346 aaPredicted RBP15.65■□□□□ 0.1
CLN3-225ENST00000566824 OR8H3Q8N146 312 aa15.65■□□□□ 0.1
CLN3-225ENST00000566824 BEST4Q8NFU0 473 aa15.65■□□□□ 0.1
CLN3-225ENST00000566824 OR10J5Q8NHC4 309 aa15.65■□□□□ 0.1
CLN3-225ENST00000566824 C5orf30Q96GV9 206 aa15.65■□□□□ 0.1
CLN3-225ENST00000566824 MRPL20Q9BYC9 149 aaKnown RBP15.65■□□□□ 0.1
CLN3-225ENST00000566824 EXTL2Q9UBQ6 330 aa15.65■□□□□ 0.1
CLN3-225ENST00000566824 DNHD1Q96M86 4753 aa15.64■□□□□ 0.09
CLN3-225ENST00000566824 ITGB1BP1O14713 200 aa15.64■□□□□ 0.09
CLN3-225ENST00000566824 RGS5O15539 181 aa15.64■□□□□ 0.09
CLN3-225ENST00000566824 LANCL1O43813 399 aa15.64■□□□□ 0.09
CLN3-225ENST00000566824 MDKP21741 143 aaPredicted RBP15.64■□□□□ 0.09
CLN3-225ENST00000566824 PRSS3P35030 304 aa15.64■□□□□ 0.09
CLN3-225ENST00000566824 LINC00205P59089 165 aa15.64■□□□□ 0.09
CLN3-225ENST00000566824 HABP2Q14520 560 aaPredicted RBP15.64■□□□□ 0.09
CLN3-225ENST00000566824 DHRS7BQ6IAN0 325 aaPredicted RBP15.64■□□□□ 0.09
CLN3-225ENST00000566824 CNIH2Q6PI25 160 aa15.64■□□□□ 0.09
CLN3-225ENST00000566824 TGIF2LXQ8IUE1 241 aa15.64■□□□□ 0.09
CLN3-225ENST00000566824 NXF2Q9GZY0 626 aaKnown RBP15.64■□□□□ 0.09
CLN3-225ENST00000566824 ANAPC10Q9UM13 185 aa15.64■□□□□ 0.09
CLN3-225ENST00000566824 SMIM31A0A1B0GVY4 71 aa15.63■□□□□ 0.09
CLN3-225ENST00000566824 J3QRK9 145 aa15.63■□□□□ 0.09
CLN3-225ENST00000566824 CRYBA1P05813 215 aa15.63■□□□□ 0.09
CLN3-225ENST00000566824 OR8U9P0C7N5 309 aa15.63■□□□□ 0.09
CLN3-225ENST00000566824 NFYAP23511 347 aaPredicted RBP15.63■□□□□ 0.09
CLN3-225ENST00000566824 RAG2P55895 527 aa15.63■□□□□ 0.09
CLN3-225ENST00000566824 HNF4GQ14541 408 aa15.63■□□□□ 0.09
CLN3-225ENST00000566824 RNASE12Q5GAN4 147 aaKnown RBP15.63■□□□□ 0.09
CLN3-225ENST00000566824 Q6ZS46 218 aa15.63■□□□□ 0.09
CLN3-225ENST00000566824 OR8U1Q8NH10 309 aa15.63■□□□□ 0.09
CLN3-225ENST00000566824 GPX8Q8TED1 209 aa15.63■□□□□ 0.09
CLN3-225ENST00000566824 ABHD1Q96SE0 405 aa15.63■□□□□ 0.09
CLN3-225ENST00000566824 NABP2Q9BQ15 211 aa15.63■□□□□ 0.09
CLN3-225ENST00000566824 GINS4Q9BRT9 223 aa15.63■□□□□ 0.09
CLN3-225ENST00000566824 C6orf62Q9GZU0 229 aaPredicted RBP15.63■□□□□ 0.09
CLN3-225ENST00000566824 SIGLEC9Q9Y336 463 aa15.63■□□□□ 0.09
CLN3-225ENST00000566824 SH2D7A6NKC9 451 aaPredicted RBP15.62■□□□□ 0.09
CLN3-225ENST00000566824 ZNF701M0R085 212 aaPredicted RBP15.62■□□□□ 0.09
CLN3-225ENST00000566824 NDUFA7O95182 113 aa15.62■□□□□ 0.09
CLN3-225ENST00000566824 DIRAS3O95661 229 aa15.62■□□□□ 0.09
CLN3-225ENST00000566824 IGKV1D-33P01593 117 aa15.62■□□□□ 0.09
CLN3-225ENST00000566824 IGKV1-33P01594 117 aa15.62■□□□□ 0.09
CLN3-225ENST00000566824 AWAT1Q58HT5 328 aa15.62■□□□□ 0.09
CLN3-225ENST00000566824 MCFD2Q8NI22 146 aa15.62■□□□□ 0.09
CLN3-225ENST00000566824 EDARADDQ8WWZ3 215 aa15.62■□□□□ 0.09
CLN3-225ENST00000566824 CT45A6P0DMU7 189 aa15.61■□□□□ 0.09
CLN3-225ENST00000566824 CT45A5P0DMU8 189 aa15.61■□□□□ 0.09
CLN3-225ENST00000566824 CT45A7P0DMV0 189 aa15.61■□□□□ 0.09
CLN3-225ENST00000566824 CBX5P45973 191 aa15.61■□□□□ 0.09
CLN3-225ENST00000566824 ARHGDIBP52566 201 aa15.61■□□□□ 0.09
CLN3-225ENST00000566824 BLCAPP62952 87 aa15.61■□□□□ 0.09
CLN3-225ENST00000566824 LSAMPQ13449 338 aa15.61■□□□□ 0.09
CLN3-225ENST00000566824 GLDNQ6ZMI3 551 aaPredicted RBP15.61■□□□□ 0.09
CLN3-225ENST00000566824 THNSL2Q86YJ6 484 aa15.61■□□□□ 0.09
CLN3-225ENST00000566824 LYSMD2Q8IV50 215 aa15.61■□□□□ 0.09
CLN3-225ENST00000566824 EAF1Q96JC9 268 aaPredicted RBP15.61■□□□□ 0.09
CLN3-225ENST00000566824 RITA1Q96K30 269 aa15.61■□□□□ 0.09
CLN3-225ENST00000566824 SLC25A33Q9BSK2 321 aa15.61■□□□□ 0.09
CLN3-225ENST00000566824 PITPNC1Q9UKF7 332 aa15.61■□□□□ 0.09
CLN3-225ENST00000566824 IGKV1D-13A0A0B4J2D9 117 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 RAB29O14966 203 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 AMY1AP04745 511 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 AMY2AP04746 511 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 IGKV1-13P0DP09 117 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 NAT1P18440 290 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 COMPP49747 757 aaPredicted RBP15.6■□□□□ 0.09
CLN3-225ENST00000566824 ARPC4P59998 168 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 RPL15P61313 204 aaKnown RBP15.6■□□□□ 0.09
CLN3-225ENST00000566824 EBI3Q14213 229 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 HES1Q14469 280 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 LIAT1Q6ZQX7 453 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 Q8N6K4 173 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 DRAXINQ8NBI3 349 aaPredicted RBP15.6■□□□□ 0.09
CLN3-225ENST00000566824 LINC01006Q8NI28 216 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 RBM14Q96PK6 669 aaKnown RBP15.6■□□□□ 0.09
CLN3-225ENST00000566824 OR2D2Q9H210 308 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 ZNF702PQ9H963 129 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 IFT46Q9NQC8 304 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 PIPOXQ9P0Z9 390 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 ADAM30Q9UKF2 790 aa15.6■□□□□ 0.09
CLN3-225ENST00000566824 TUSC2O75896 110 aa15.59■□□□□ 0.09
CLN3-225ENST00000566824 TSPAN9O75954 239 aa15.59■□□□□ 0.09
CLN3-225ENST00000566824 OR2F2O95006 317 aa15.59■□□□□ 0.09
CLN3-225ENST00000566824 LPLP06858 475 aa15.59■□□□□ 0.09
CLN3-225ENST00000566824 FAM106CPP0CH98 169 aa15.59■□□□□ 0.09
CLN3-225ENST00000566824 TMEM11P17152 192 aa15.59■□□□□ 0.09
CLN3-225ENST00000566824 CD1BP29016 333 aa15.59■□□□□ 0.09
CLN3-225ENST00000566824 GPR12P47775 334 aa15.59■□□□□ 0.09
CLN3-225ENST00000566824 OR52I2Q8NH67 350 aa15.59■□□□□ 0.09
CLN3-225ENST00000566824 ANK2Q01484 3957 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 TXNL1O43396 289 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 PMP2P02689 132 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms