RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 U3KQK5 164 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 CASQ2O14958 399 aaPredicted RBP14.56□□□□□ -0.08
CLN3-218ENST00000565688 SLC22A1O15245 554 aa14.56□□□□□ -0.08
CLN3-218ENST00000565688 CDK1P06493 297 aa14.56□□□□□ -0.08
CLN3-218ENST00000565688 HTR2CP28335 458 aa14.56□□□□□ -0.08
CLN3-218ENST00000565688 BLVRBP30043 206 aaPredicted RBP14.56□□□□□ -0.08
CLN3-218ENST00000565688 RAB9AP51151 201 aa14.56□□□□□ -0.08
CLN3-218ENST00000565688 HSD17B12Q53GQ0 312 aa14.56□□□□□ -0.08
CLN3-218ENST00000565688 FAM27D1Q5T7N8 215 aa14.56□□□□□ -0.08
CLN3-218ENST00000565688 ZNF660Q6AZW8 331 aaPredicted RBP14.56□□□□□ -0.08
CLN3-218ENST00000565688 ZNF880Q6PDB4 577 aa14.56□□□□□ -0.08
CLN3-218ENST00000565688 OR5H14A6NHG9 310 aa14.55□□□□□ -0.08
CLN3-218ENST00000565688 ST8SIA5O15466 376 aa14.55□□□□□ -0.08
CLN3-218ENST00000565688 BPNT1O95861 308 aa14.55□□□□□ -0.08
CLN3-218ENST00000565688 CD37P11049 281 aa14.55□□□□□ -0.08
CLN3-218ENST00000565688 MC5RP33032 325 aa14.55□□□□□ -0.08
CLN3-218ENST00000565688 CRIP2P52943 208 aaPredicted RBP14.55□□□□□ -0.08
CLN3-218ENST00000565688 UNC119Q13432 240 aa14.55□□□□□ -0.08
CLN3-218ENST00000565688 SPHARQ15513 63 aa14.55□□□□□ -0.08
CLN3-218ENST00000565688 FAM131AQ6UXB0 335 aa14.55□□□□□ -0.08
CLN3-218ENST00000565688 CEACAM19Q7Z692 300 aa14.55□□□□□ -0.08
CLN3-218ENST00000565688 TCTEX1D1Q8N7M0 179 aa14.55□□□□□ -0.08
CLN3-218ENST00000565688 OR6M1Q8NGM8 313 aa14.55□□□□□ -0.08
CLN3-218ENST00000565688 PLEKHJ1Q9NW61 149 aa14.55□□□□□ -0.08
CLN3-218ENST00000565688 MGAT4AQ9UM21 535 aa14.55□□□□□ -0.08
CLN3-218ENST00000565688 TMEM14DPA8MWL7 114 aa14.54□□□□□ -0.08
CLN3-218ENST00000565688 ITGB1BP1O14713 200 aa14.54□□□□□ -0.08
CLN3-218ENST00000565688 RRHO14718 337 aa14.54□□□□□ -0.08
CLN3-218ENST00000565688 RBBP9O75884 186 aa14.54□□□□□ -0.08
CLN3-218ENST00000565688 GNB1P62873 340 aa14.54□□□□□ -0.08
CLN3-218ENST00000565688 QRFPP83859 136 aa14.54□□□□□ -0.08
CLN3-218ENST00000565688 PLGLAQ15195 96 aa14.54□□□□□ -0.08
CLN3-218ENST00000565688 ZNF429Q86V71 674 aa14.54□□□□□ -0.08
CLN3-218ENST00000565688 SETD6Q8TBK2 473 aa14.54□□□□□ -0.08
CLN3-218ENST00000565688 OR5B12Q96R08 314 aa14.54□□□□□ -0.08
CLN3-218ENST00000565688 NICN1Q9BSH3 213 aa14.54□□□□□ -0.08
CLN3-218ENST00000565688 FOXA2Q9Y261 457 aaPredicted RBP14.54□□□□□ -0.08
CLN3-218ENST00000565688 LSM2Q9Y333 95 aaKnown RBP14.54□□□□□ -0.08
CLN3-218ENST00000565688 TRBV6-6A0A0A6YYG2 114 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 PTGES3LE9PB15 166 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 UCHL1P09936 223 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 CT45A6P0DMU7 189 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 CT45A5P0DMU8 189 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 CT45A7P0DMV0 189 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 TMEM267Q0VDI3 215 aaPredicted RBP14.53□□□□□ -0.08
CLN3-218ENST00000565688 ECSCRQ19T08 205 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 C19orf54Q5BKX5 351 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 ASPHD1Q5U4P2 390 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 EDARADDQ8WWZ3 215 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 RNF5Q99942 180 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 URM1Q9BTM9 101 aaKnown RBP14.53□□□□□ -0.08
CLN3-218ENST00000565688 SCN3BQ9NY72 215 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 RNF150Q9ULK6 438 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 WASHC3Q9Y3C0 194 aa14.53□□□□□ -0.08
CLN3-218ENST00000565688 H0YJW9 148 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 H7C2Y5 167 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 OVOL1O14753 267 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 LY86O95711 162 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 GSTP1P09211 210 aaKnown RBP14.52□□□□□ -0.09
CLN3-218ENST00000565688 ZBTB25P24278 435 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 CX3CL1P78423 397 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 MED22Q15528 200 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 RPL39P5Q59GN2 51 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 PYHIN1Q6K0P9 492 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 OR5AN1Q8NGI8 311 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 UFD1Q92890 307 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 AGMATQ9BSE5 352 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 LPAR5Q9H1C0 372 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 KCNK15Q9H427 330 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 FBXL15Q9H469 300 aa14.52□□□□□ -0.09
CLN3-218ENST00000565688 A0A1W2PN81 502 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 HSPA12AO43301 675 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 ARSBP15848 533 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 CHRNA7P36544 502 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 CEACAM6P40199 344 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 RANBP1P43487 201 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 NDPQ00604 133 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 CD200R1LQ6Q8B3 271 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 FAM89BQ8N5H3 189 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 DCUN1D4Q92564 292 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 ABHD14BQ96IU4 210 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 PLGRKTQ9HBL7 147 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 AK3Q9UIJ7 227 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 HSF4Q9ULV5 492 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 FBXO7Q9Y3I1 522 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 SMAD5-AS1Q9Y6J3 95 aa14.51□□□□□ -0.09
CLN3-218ENST00000565688 A0A0A6YYD4 124 aa14.5□□□□□ -0.09
CLN3-218ENST00000565688 LINC01619G3V211 115 aa14.5□□□□□ -0.09
CLN3-218ENST00000565688 SOX15O60248 233 aa14.5□□□□□ -0.09
CLN3-218ENST00000565688 HLA-DRB3P79483 266 aa14.5□□□□□ -0.09
CLN3-218ENST00000565688 TRAM1Q15629 374 aa14.5□□□□□ -0.09
CLN3-218ENST00000565688 AKIRIN2Q53H80 203 aa14.5□□□□□ -0.09
CLN3-218ENST00000565688 LIPKQ5VXJ0 399 aa14.5□□□□□ -0.09
CLN3-218ENST00000565688 ABHD5Q8WTS1 349 aa14.5□□□□□ -0.09
CLN3-218ENST00000565688 PTX4Q96A99 478 aa14.5□□□□□ -0.09
CLN3-218ENST00000565688 TOLLIPQ9H0E2 274 aa14.5□□□□□ -0.09
CLN3-218ENST00000565688 PARP12Q9H0J9 701 aaKnown RBP14.5□□□□□ -0.09
CLN3-218ENST00000565688 C11orf54Q9H0W9 315 aaPredicted RBP14.5□□□□□ -0.09
CLN3-218ENST00000565688 ISYNA1Q9NPH2 558 aa14.5□□□□□ -0.09
CLN3-218ENST00000565688 C12orf4Q9NQ89 552 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms