RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 CABLES2Q9BTV7 478 aa13.86□□□□□ -0.19
CLN3-217ENST00000565354 RDH8Q9NYR8 311 aa13.86□□□□□ -0.19
CLN3-217ENST00000565354 RBM7Q9Y580 266 aaKnown RBP13.86□□□□□ -0.19
CLN3-217ENST00000565354 M0QZ24 198 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 TIMM23O14925 209 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 SSX5O60225 188 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 PTHLHP12272 177 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 PRSS3P35030 304 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 ZNF816Q0VGE8 651 aaPredicted RBP13.85□□□□□ -0.19
CLN3-217ENST00000565354 DIAPH2-AS1Q14236 149 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 HES1Q14469 280 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 IGSF11Q5DX21 431 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 TMEM219Q86XT9 240 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 OR56B4Q8NH76 319 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 CITED1Q99966 193 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 BEX1Q9HBH7 125 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 PIPOXQ9P0Z9 390 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 EXTL2Q9UBQ6 330 aa13.85□□□□□ -0.19
CLN3-217ENST00000565354 IGHV1-3A0A0C4DH29 117 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 IGKV1-6A0A0C4DH72 117 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 MEIS3P1A6NDR6 274 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 DIRAS3O95661 229 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 CTXN2P0C2S0 81 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 FAM106CPP0CH98 169 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 CD24P25063 80 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 HERPUD1Q15011 391 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 SNX29P2Q8IUI4 249 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 DRAM1Q8N682 238 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 BEST4Q8NFU0 473 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 OR4F5Q8NH21 305 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 PIFOQ8TCI5 191 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 RTN4IP1Q8WWV3 396 aaPredicted RBP13.84□□□□□ -0.19
CLN3-217ENST00000565354 S1PR3Q99500 378 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 C6orf62Q9GZU0 229 aaPredicted RBP13.84□□□□□ -0.19
CLN3-217ENST00000565354 ZNF221Q9UK13 617 aa13.84□□□□□ -0.19
CLN3-217ENST00000565354 IGKV1D-8A0A087WSZ0 117 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 A0A1W2PPI3 338 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 A6NDX4 124 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 ITGB1BP1O14713 200 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 RAB29O14966 203 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 FCER2P06734 321 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 RAG2P55895 527 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 CNIH2Q6PI25 160 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 HOGA1Q86XE5 327 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 GVQW1Q8N7I0 195 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 AKR1E2Q96JD6 320 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 DCUN1D5Q9BTE7 237 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 C11orf54Q9H0W9 315 aaPredicted RBP13.83□□□□□ -0.2
CLN3-217ENST00000565354 C1RLQ9NZP8 487 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 ANXA10Q9UJ72 324 aa13.83□□□□□ -0.2
CLN3-217ENST00000565354 SAA2-SAA4A0A096LPE2 208 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 TRBV6-7A0A0A0MS04 114 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 IGHV3-72A0A0B4J1Y9 119 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 ZNF701M0R085 212 aaPredicted RBP13.82□□□□□ -0.2
CLN3-217ENST00000565354 LANCL1O43813 399 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 SNRNP70P08621 437 aaKnown RBP13.82□□□□□ -0.2
CLN3-217ENST00000565354 SAA2P0DJI9 122 aaPredicted RBP13.82□□□□□ -0.2
CLN3-217ENST00000565354 GPR12P47775 334 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 ZNF137PP52743 207 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 MCFD2Q8NI22 146 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 ST6GALNAC6Q969X2 333 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 ABHD14BQ96IU4 210 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 NPFFR1Q9GZQ6 430 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 PARP12Q9H0J9 701 aaKnown RBP13.82□□□□□ -0.2
CLN3-217ENST00000565354 RBM38Q9H0Z9 239 aaKnown RBP13.82□□□□□ -0.2
CLN3-217ENST00000565354 IFI27L2Q9H2X8 130 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 GHITMQ9H3K2 345 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 NDUFA13Q9P0J0 144 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 RNF150Q9ULK6 438 aa13.82□□□□□ -0.2
CLN3-217ENST00000565354 CTDSP2O14595 271 aa13.81□□□□□ -0.2
CLN3-217ENST00000565354 IGKV1D-33P01593 117 aa13.81□□□□□ -0.2
CLN3-217ENST00000565354 IGKV1-33P01594 117 aa13.81□□□□□ -0.2
CLN3-217ENST00000565354 TMEM11P17152 192 aa13.81□□□□□ -0.2
CLN3-217ENST00000565354 OR3A3P47888 321 aa13.81□□□□□ -0.2
CLN3-217ENST00000565354 ARSJQ5FYB0 599 aaPredicted RBP13.81□□□□□ -0.2
CLN3-217ENST00000565354 CCBE1Q6UXH8 406 aaPredicted RBP13.81□□□□□ -0.2
CLN3-217ENST00000565354 C16orf82Q7Z2V1 217 aa13.81□□□□□ -0.2
CLN3-217ENST00000565354 THNSL2Q86YJ6 484 aa13.81□□□□□ -0.2
CLN3-217ENST00000565354 LAX1Q8IWV1 398 aa13.81□□□□□ -0.2
CLN3-217ENST00000565354 OR4C13Q8NGP0 309 aa13.81□□□□□ -0.2
CLN3-217ENST00000565354 C15orf40Q8WUR7 153 aa13.81□□□□□ -0.2
CLN3-217ENST00000565354 SLC25A33Q9BSK2 321 aa13.81□□□□□ -0.2
CLN3-217ENST00000565354 CHST1O43916 411 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 NDUFA7O95182 113 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 HLA-DQB1P01920 261 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 OR8U9P0C7N5 309 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 RELBQ01201 579 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 HNF4GQ14541 408 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 FBLN7Q53RD9 439 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 RPL39P5Q59GN2 51 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 RNASE12Q5GAN4 147 aaKnown RBP13.8□□□□□ -0.2
CLN3-217ENST00000565354 FAM71F2Q6NXP2 309 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 ZNF833PQ6ZTB9 187 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 ODF3L1Q8IXM7 274 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 OR8U1Q8NH10 309 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 CFHR4Q92496 578 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 DIRAS2Q96HU8 199 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 MRPL20Q9BYC9 149 aaKnown RBP13.8□□□□□ -0.2
CLN3-217ENST00000565354 OR2D2Q9H210 308 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 MIXL1Q9H2W2 232 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms