RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 LUMP51884 338 aaPredicted RBP13.47□□□□□ -0.25
VPS4A-202ENST00000562754 DCTN2Q13561 401 aaKnown RBP13.47□□□□□ -0.25
VPS4A-202ENST00000562754 TMEM17Q86X19 198 aa13.47□□□□□ -0.25
VPS4A-202ENST00000562754 ODF3L1Q8IXM7 274 aa13.47□□□□□ -0.25
VPS4A-202ENST00000562754 ABHD14BQ96IU4 210 aa13.47□□□□□ -0.25
VPS4A-202ENST00000562754 PRRT1Q99946 306 aa13.47□□□□□ -0.25
VPS4A-202ENST00000562754 OR2D2Q9H210 308 aa13.47□□□□□ -0.25
VPS4A-202ENST00000562754 PALMDQ9NP74 551 aa13.47□□□□□ -0.25
VPS4A-202ENST00000562754 RNF150Q9ULK6 438 aa13.47□□□□□ -0.25
VPS4A-202ENST00000562754 NPFFO15130 113 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 RAB7AP51149 207 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 CCR6P51684 374 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 PRRX1P54821 245 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 GPR157Q5UAW9 335 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 BRD3OSQ6XYD6 125 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 IDO2Q6ZQW0 420 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 IL17RELQ6ZVW7 336 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 LHFPL4Q7Z7J7 247 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 LYG1Q8N1E2 194 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 PIP4P2Q8N4L2 257 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 TERB2Q8NHR7 220 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 SECTM1Q8WVN6 248 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 TOMM40LQ969M1 308 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 CREB3L1Q96BA8 519 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 AJUBAQ96IF1 538 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 SLC5A7Q9GZV3 580 aa13.46□□□□□ -0.25
VPS4A-202ENST00000562754 GSX1Q9H4S2 264 aaPredicted RBP13.46□□□□□ -0.25
VPS4A-202ENST00000562754 SAA2-SAA4A0A096LPE2 208 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 CENPXA8MT69 81 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 BUB1B-PAK6H3BSN5 160 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 IGLV2-14P01704 120 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 SAA2P0DJI9 122 aaPredicted RBP13.45□□□□□ -0.26
VPS4A-202ENST00000562754 SAA4P35542 130 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 ZNF137PP52743 207 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 DIAPH2-AS1Q14236 149 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 FAM120AOSQ5T036 256 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 CLEC9AQ6UXN8 241 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 OR10X1Q8NGY0 326 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 FAM216AQ8WUB2 273 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 C17orf50Q8WW18 174 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 ST6GALNAC6Q969X2 333 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 ZNF251Q9BRH9 671 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 CCL28Q9NRJ3 127 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 SCP2D1Q9UJQ7 156 aa13.45□□□□□ -0.26
VPS4A-202ENST00000562754 RBM7Q9Y580 266 aaKnown RBP13.45□□□□□ -0.26
VPS4A-202ENST00000562754 LY6LH3BQJ8 138 aa13.44□□□□□ -0.26
VPS4A-202ENST00000562754 PROP1O75360 226 aa13.44□□□□□ -0.26
VPS4A-202ENST00000562754 GPR12P47775 334 aa13.44□□□□□ -0.26
VPS4A-202ENST00000562754 UCP3P55916 312 aa13.44□□□□□ -0.26
VPS4A-202ENST00000562754 BAMBIQ13145 260 aa13.44□□□□□ -0.26
VPS4A-202ENST00000562754 MIDNQ504T8 468 aa13.44□□□□□ -0.26
VPS4A-202ENST00000562754 RPL39P5Q59GN2 51 aa13.44□□□□□ -0.26
VPS4A-202ENST00000562754 POC5Q8NA72 575 aa13.44□□□□□ -0.26
VPS4A-202ENST00000562754 MARCH1Q8TCQ1 289 aa13.44□□□□□ -0.26
VPS4A-202ENST00000562754 TBL2Q9Y4P3 447 aaKnown RBP13.44□□□□□ -0.26
VPS4A-202ENST00000562754 AMMECR1Q9Y4X0 333 aaPredicted RBP13.44□□□□□ -0.26
VPS4A-202ENST00000562754 SOX21Q9Y651 276 aaPredicted RBP13.44□□□□□ -0.26
VPS4A-202ENST00000562754 HSD17B6O14756 317 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 PGAM2P15259 253 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 HTR1DP28221 377 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 SLC6A1P30531 599 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 GNRHRP30968 328 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 DEFA1P59665 94 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 DEFA3P59666 94 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 PLA1AQ53H76 456 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 TPTE2P1Q5T6R2 138 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 MINOS1Q5TGZ0 78 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 ZNF818PQ6ZRF7 136 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 ZNF833PQ6ZTB9 187 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 DYNAPQ8N1N2 210 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 DRAM1Q8N682 238 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 ZNF645Q8N7E2 425 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 NANPQ8TBE9 248 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 TMEM160Q9NX00 188 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 SDHAF2Q9NX18 166 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 DPM3Q9P2X0 92 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 ZNF221Q9UK13 617 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 NUP50Q9UKX7 468 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 VSIG4Q9Y279 399 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 MINOS1-NBL1R4GNA1 71 aa13.43□□□□□ -0.26
VPS4A-202ENST00000562754 HIVEP2P31629 2446 aa13.42□□□□□ -0.26
VPS4A-202ENST00000562754 RAB29O14966 203 aa13.42□□□□□ -0.26
VPS4A-202ENST00000562754 NDUFB6O95139 128 aa13.42□□□□□ -0.26
VPS4A-202ENST00000562754 PI3P19957 117 aa13.42□□□□□ -0.26
VPS4A-202ENST00000562754 EPHA1P21709 976 aa13.42□□□□□ -0.26
VPS4A-202ENST00000562754 PAX6P26367 422 aa13.42□□□□□ -0.26
VPS4A-202ENST00000562754 IL3RAP26951 378 aa13.42□□□□□ -0.26
VPS4A-202ENST00000562754 REG1BP48304 166 aa13.42□□□□□ -0.26
VPS4A-202ENST00000562754 EIF4EBP1Q13541 118 aaPredicted RBP13.42□□□□□ -0.26
VPS4A-202ENST00000562754 MZT2BQ6NZ67 158 aa13.42□□□□□ -0.26
VPS4A-202ENST00000562754 Q71RC1 249 aaPredicted RBP13.42□□□□□ -0.26
VPS4A-202ENST00000562754 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.42□□□□□ -0.26
VPS4A-202ENST00000562754 RSRP1Q9BUV0 290 aa13.42□□□□□ -0.26
VPS4A-202ENST00000562754 OCEL1Q9H607 264 aa13.42□□□□□ -0.26
VPS4A-202ENST00000562754 PIPOXQ9P0Z9 390 aa13.42□□□□□ -0.26
VPS4A-202ENST00000562754 NAV3Q8IVL0 2385 aa13.42□□□□□ -0.26
VPS4A-202ENST00000562754 A0A0U1RQK1 487 aa13.41□□□□□ -0.26
VPS4A-202ENST00000562754 LEUTXA8MZ59 168 aa13.41□□□□□ -0.26
VPS4A-202ENST00000562754 LGALS4P56470 323 aa13.41□□□□□ -0.26
VPS4A-202ENST00000562754 RBMS2Q15434 407 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms