RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 CT45A5P0DMU8 189 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 CT45A7P0DMV0 189 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 CD37P11049 281 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 CHRNA7P36544 502 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 GABPB1Q06547 395 aaPredicted RBP12.61□□□□□ -0.39
CLN3-208ENST00000561505 TMEM267Q0VDI3 215 aaPredicted RBP12.61□□□□□ -0.39
CLN3-208ENST00000561505 JAGN1Q8N5M9 183 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 OR5AN1Q8NGI8 311 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 GALMQ96C23 342 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 FLYWCH2Q96CP2 140 aaKnown RBP12.61□□□□□ -0.39
CLN3-208ENST00000561505 UQCC2Q9BRT2 126 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 FBXL15Q9H469 300 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 GAR1Q9NY12 217 aaKnown RBP12.61□□□□□ -0.39
CLN3-208ENST00000561505 PIPOXQ9P0Z9 390 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 KIAA1456Q9P272 454 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 OR5H14A6NHG9 310 aa12.6□□□□□ -0.39
CLN3-208ENST00000561505 RBBP9O75884 186 aa12.6□□□□□ -0.39
CLN3-208ENST00000561505 NAPSAO96009 420 aa12.6□□□□□ -0.39
CLN3-208ENST00000561505 IGHV4-30-4P0DP06 118 aa12.6□□□□□ -0.39
CLN3-208ENST00000561505 MC5RP33032 325 aa12.6□□□□□ -0.39
CLN3-208ENST00000561505 DOC2BQ14184 412 aa12.6□□□□□ -0.39
CLN3-208ENST00000561505 LRRC36Q1X8D7 754 aa12.6□□□□□ -0.39
CLN3-208ENST00000561505 AWAT2Q6E213 333 aa12.6□□□□□ -0.39
CLN3-208ENST00000561505 ZNF562Q6V9R5 426 aa12.6□□□□□ -0.39
CLN3-208ENST00000561505 OR2AK2Q8NG84 335 aa12.6□□□□□ -0.39
CLN3-208ENST00000561505 DERL3Q96Q80 235 aa12.6□□□□□ -0.39
CLN3-208ENST00000561505 SLA2Q9H6Q3 261 aa12.6□□□□□ -0.39
CLN3-208ENST00000561505 H0YJW9 148 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 RAB29O14966 203 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 PROP1O75360 226 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 BRI3O95415 125 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 CAPGP40121 348 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 PITPNAQ00169 270 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 ECSCRQ19T08 205 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 FAM131AQ6UXB0 335 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 NKAIN3Q8N8D7 197 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 OR4C12Q96R67 309 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 SULT4A1Q9BR01 284 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 CNOT2Q9NZN8 540 aaKnown RBP12.59□□□□□ -0.39
CLN3-208ENST00000561505 SLC23A1Q9UHI7 598 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 RNF150Q9ULK6 438 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 STUB1Q9UNE7 303 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 GAB2Q9UQC2 676 aa12.59□□□□□ -0.39
CLN3-208ENST00000561505 CRTAPO75718 401 aaPredicted RBP12.58□□□□□ -0.4
CLN3-208ENST00000561505 MYL12AP19105 171 aa12.58□□□□□ -0.4
CLN3-208ENST00000561505 C1orf100Q5SVJ3 147 aa12.58□□□□□ -0.4
CLN3-208ENST00000561505 IL34Q6ZMJ4 242 aa12.58□□□□□ -0.4
CLN3-208ENST00000561505 PPP1R27Q86WC6 154 aa12.58□□□□□ -0.4
CLN3-208ENST00000561505 C10orf67Q8IYJ2 551 aa12.58□□□□□ -0.4
CLN3-208ENST00000561505 SVOPQ8N4V2 548 aa12.58□□□□□ -0.4
CLN3-208ENST00000561505 CASTOR1Q8WTX7 329 aa12.58□□□□□ -0.4
CLN3-208ENST00000561505 TMEM80Q96HE8 168 aa12.58□□□□□ -0.4
CLN3-208ENST00000561505 THAP7Q9BT49 309 aaPredicted RBP12.58□□□□□ -0.4
CLN3-208ENST00000561505 PALMDQ9NP74 551 aa12.58□□□□□ -0.4
CLN3-208ENST00000561505 TRBV6-6A0A0A6YYG2 114 aa12.57□□□□□ -0.4
CLN3-208ENST00000561505 A0A1W2PPK0 400 aa12.57□□□□□ -0.4
CLN3-208ENST00000561505 DYNC1I1O14576 645 aa12.57□□□□□ -0.4
CLN3-208ENST00000561505 TFAP2AP05549 437 aa12.57□□□□□ -0.4
CLN3-208ENST00000561505 UBBP0CG47 229 aa12.57□□□□□ -0.4
CLN3-208ENST00000561505 TAS2R43P59537 309 aa12.57□□□□□ -0.4
CLN3-208ENST00000561505 ACTBL2Q562R1 376 aa12.57□□□□□ -0.4
CLN3-208ENST00000561505 PQLC1Q8N2U9 271 aa12.57□□□□□ -0.4
CLN3-208ENST00000561505 THRSPQ92748 146 aa12.57□□□□□ -0.4
CLN3-208ENST00000561505 ISOC1Q96CN7 298 aa12.57□□□□□ -0.4
CLN3-208ENST00000561505 TM2D1Q9BX74 207 aa12.57□□□□□ -0.4
CLN3-208ENST00000561505 H3BUA1 57 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 BAG2O95816 211 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 RPS27AP62979 156 aaKnown RBP12.56□□□□□ -0.4
CLN3-208ENST00000561505 SSBP2P81877 361 aaPredicted RBP12.56□□□□□ -0.4
CLN3-208ENST00000561505 KLF5Q13887 457 aaPredicted RBP12.56□□□□□ -0.4
CLN3-208ENST00000561505 PSG5Q15238 335 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 MOGAT2Q3SYC2 334 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 RPL39P5Q59GN2 51 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 ZFP41Q8N8Y5 198 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 LFNGQ8NES3 379 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 GGHQ92820 318 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 PTX4Q96A99 478 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 FAAP24Q9BTP7 215 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 ELOVL1Q9BW60 279 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 PARP12Q9H0J9 701 aaKnown RBP12.56□□□□□ -0.4
CLN3-208ENST00000561505 S100A14Q9HCY8 104 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 RANGRFQ9HD47 186 aaPredicted RBP12.56□□□□□ -0.4
CLN3-208ENST00000561505 SMPD3Q9NY59 655 aaPredicted RBP12.56□□□□□ -0.4
CLN3-208ENST00000561505 SIGLEC8Q9NYZ4 499 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 NKX1-2Q9UD57 310 aaPredicted RBP12.56□□□□□ -0.4
CLN3-208ENST00000561505 STEAP1Q9UHE8 339 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 WASHC3Q9Y3C0 194 aa12.56□□□□□ -0.4
CLN3-208ENST00000561505 ST8SIA5O15466 376 aa12.55□□□□□ -0.4
CLN3-208ENST00000561505 SPDEFO95238 335 aa12.55□□□□□ -0.4
CLN3-208ENST00000561505 IGHV3-11P01762 117 aa12.55□□□□□ -0.4
CLN3-208ENST00000561505 SNRPBP14678 240 aaKnown RBP12.55□□□□□ -0.4
CLN3-208ENST00000561505 QRFPP83859 136 aa12.55□□□□□ -0.4
CLN3-208ENST00000561505 MED21Q13503 144 aa12.55□□□□□ -0.4
CLN3-208ENST00000561505 SRSF7Q16629 238 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLN3-208ENST00000561505 ZFAND6Q6FIF0 208 aa12.55□□□□□ -0.4
CLN3-208ENST00000561505 UNQ5815/PRO19632Q6UWF5 114 aa12.55□□□□□ -0.4
CLN3-208ENST00000561505 ABRACLQ9P1F3 81 aa12.55□□□□□ -0.4
CLN3-208ENST00000561505 EFCAB10A6NFE3 127 aa12.54□□□□□ -0.4
CLN3-208ENST00000561505 ZP3P21754 424 aa12.54□□□□□ -0.4
CLN3-208ENST00000561505 HTR2CP28335 458 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms